Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2138
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.53 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.53 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   0.93 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.5  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 147 QLERINVYYNEASGGKY-VPQHHPHPLATRH 236
           + ++ + YY     G+Y +P H   P ATR+
Sbjct: 425 ETDKYDAYYGNRFSGEYEIPAHGLPPSATRY 455


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 86  LPELSSDLVAALTSLDMYDFPHFVLFM 6
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 0.93
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 195 YVPQHHPHPLAT 230
           + P HHPHP  T
Sbjct: 461 HTPHHHPHPPET 472



 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 201 PQHHPHPLATRHHGLCPPL 257
           P HH    AT HH    PL
Sbjct: 430 PHHHHSHAATPHHQHSTPL 448


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
            75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +1

Query: 148  SWSASMYTTMKPPAASTCPSTILIHLQPGTMDSVRLWTFHTDLPSGQLHLQDNPSSQATT 327
            S +A+  T+  P  AS+  +T+++   P  M  +++    +  P        +PS +   
Sbjct: 831  SAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSKKSPSPSPRPLV 890

Query: 328  GP 333
            GP
Sbjct: 891  GP 892


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 274 LPSGQLHLQD 303
           LPSG+LH++D
Sbjct: 160 LPSGELHIRD 169


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 209 VLGHVLAAGGFIVVYIDALQLQVRVP 132
           +LG V A G  +VVYI      +R P
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTP 86


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 135 DSDLQLERINVYYNEASGGKYV 200
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 245 LSASGPFTQIFPPDNFIFK 301
           +  S PF Q  PP+ + F+
Sbjct: 153 IGPSTPFPQFIPPNAYKFR 171


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 204 QHHPHPLATRHH 239
           Q+HPH  ++ HH
Sbjct: 325 QYHPHRGSSPHH 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,355
Number of Sequences: 438
Number of extensions: 2514
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)