Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2137
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...   122   2e-30
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    60   1e-11
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    57   1e-10
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    57   1e-10
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    49   3e-08
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.080
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   3.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.0  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   3.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.9  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   6.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.1  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score =  122 bits (295), Expect = 2e-30
 Identities = 55/70 (78%), Positives = 61/70 (87%)
 Frame = +1

Query: 328 GREELSPASSINGCSADADARRHKKGPAPLQQEELCLVCGDRTSGYHYNALTCEGCKGFF 507
           GRE+LSP SS+NG SAD+   + KKGP P QQEELCLVCGDR SGYHYNALTCEGCKGFF
Sbjct: 154 GREDLSP-SSLNGYSADSCDSKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFF 212

Query: 508 KRSVTKNAVY 537
           +RS+TKNAVY
Sbjct: 213 RRSITKNAVY 222



 Score = 27.1 bits (57), Expect = 0.14
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 525 KRSIYLVNLDMPVKMDMSMRRKCQKWSIKE 614
           K ++Y        ++DM MRRKCQ+  +K+
Sbjct: 218 KNAVYQCKYGNNCEIDMYMRRKCQECRLKK 247


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 60.5 bits (140), Expect = 1e-11
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +1

Query: 424 EELCLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
           + LC +CGDR SG HY   +CEGCKGFFKR+V K+  Y
Sbjct: 83  KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSY 120


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +1

Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVYI 540
           C VCGD +SG HYN   C+GC GFFKRS+ +N  Y+
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYV 73


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +1

Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVYI 540
           C VCGD +SG HYN   C+GC GFFKRS+ +N  Y+
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYV 73


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 427 ELCLVCGDRTSGYHYNALTCEGCKGFFKRS 516
           +LC VCG+  +G+H+ A TCEGCK FF R+
Sbjct: 3   QLCKVCGEPAAGFHFGAFTCEGCKSFFGRT 32


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 27.9 bits (59), Expect = 0.080
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = +2

Query: 122 RRPSMEPSSYGATMTESLIIQPSLCWVHAICNSN-SYNLS--NHIQHHRRSPRCLY---- 280
           + P  +P  YG   +E +   P  C  + +C S  SY+LS   ++     S +C Y    
Sbjct: 550 QNPPTKP--YGTCRSEGIFSDPKNCAAYYVCRSGLSYHLSCAENMMFDPMSGKCEYSLGE 607

Query: 281 QCLPQHRNQKMNRCHQVE 334
           +C P    Q  N   Q E
Sbjct: 608 KCRPGQIIQVANSLRQYE 625


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 560 CENGYVHEEEMSKVVD*RKWSNRVRENG 643
           C NGYV E    ++ +   + N V+E G
Sbjct: 373 CGNGYVCEHRWRQIFNMVGFRNAVQETG 400


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = -1

Query: 567 FSQACPNLPNIYCVFGDTPLE-------ESFASFTRQ 478
           F  A P    +Y   GDTPLE       E+F+S+ R+
Sbjct: 393 FLPALPGYVPVYIRPGDTPLEDINPDLAEAFSSYARK 429


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = -1

Query: 567 FSQACPNLPNIYCVFGDTPLE-------ESFASFTRQ 478
           F  A P    +Y   GDTPLE       E+F+S+ R+
Sbjct: 218 FLPALPGYVPVYIRPGDTPLEDINPDLAEAFSSYARK 254


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 307 ENESMSSGREELSPASSIN--GCSADADARRHKKGPA 411
           E +    G +E S    ++  GCS   + +  +KGPA
Sbjct: 386 ERQLAVGGSQEESRVLDLSKPGCSYTGEQKSRRKGPA 422


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 301 KSENESMSSGREELSPA 351
           KS+  S +SGRE+LSP+
Sbjct: 81  KSDTSS-ASGREDLSPS 96


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 203 HAICNSNSYNLSNHIQH 253
           H++ NSNS    + IQH
Sbjct: 253 HSVDNSNSSEKKSSIQH 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,475
Number of Sequences: 336
Number of extensions: 3545
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)