Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2137
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.3  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    26   4.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   5.6  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   9.9  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   9.9  

>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 149 SSRAPYSGDAKDSGDITMAGGKPSAEDDVTSEELSSSIRSGK 24
           SS      +AK+SG  T    +PS++ D+   +L   +R+G+
Sbjct: 59  SSDITRHSNAKNSGKDTQFYEEPSSKQDIELHKLHEKLRNGQ 100


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 331 REELSPASSINGCSADADARRHKKGPAPLQQEELCLVCGDRTSGYHYNALTCEGCK 498
           R E++P       SA+  +   +K  A L+QE L    G +      +  TC  CK
Sbjct: 204 RNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCK 259


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 54  FRSDIVFGTGFATGHGYVAGILGVARVWSPRAMEL 158
           F +DIV  TG      Y+A    V +++ PRA+++
Sbjct: 454 FEADIVEATGVVGSDPYLAPETLVRKLYDPRAVDI 488


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 323 HQVERNFRRLQA*MAA-VLMLTPDGIRKVLHLYSKRSYVLSAATEPPDT 466
           H VE  F  L   ++  V++L    +RK L     +  +LS    PPDT
Sbjct: 518 HDVEGQFAELTENLSRRVILLNEQSLRKFLPQRILQGTILSFDPLPPDT 566


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 599 LLTFPPHGHIHFHRHVQIYQIYTAFLVTLRLKNPLHPSHVSAL 471
           LL +P +  IH   HV+I  + T F  TLR    L  SH++ L
Sbjct: 273 LLHYPDYERIHSDIHVRITNLPTCF--TLR---DLRQSHLNCL 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,637
Number of Sequences: 5004
Number of extensions: 56959
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)