Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2137
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1765 + 39735629-39736240                                         29   2.5  
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733...    29   4.4  
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419     28   7.7  

>01_06_1765 + 39735629-39736240
          Length = 203

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 85  LPPAMVMSPESLASPEYGALELWSYDDG 168
           +PP   + PESL   +   L LWS+D G
Sbjct: 171 IPPPQSLLPESLPDDDGEPLRLWSFDAG 198


>08_01_0764 -
           7332969-7333870,7334044-7334369,7334712-7335384,
           7336195-7336219
          Length = 641

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 458 PDTTTTH*RVKDAKDSSSGVSPKTQYIFGKFGHACENGY 574
           P   T H    + +   SG+SP T+Y F      C  GY
Sbjct: 387 PAEPTCHVLRPNTRSLFSGLSPSTEYFFKVLPFGCSQGY 425


>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
          Length = 396

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 182 QPSLCWVHAICNSNSYNLSNHIQHHRRSPR 271
           QPS  WV ++C +   N  + ++HHRRS R
Sbjct: 289 QPSE-WVCSLCQAKC-NTESQLEHHRRSTR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,261,424
Number of Sequences: 37544
Number of extensions: 419075
Number of successful extensions: 1489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)