Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2137
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 4e-13
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 64 1e-10
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 61 7e-10
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 60 1e-09
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 59 3e-09
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 59 3e-09
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 57 1e-08
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 57 1e-08
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 57 1e-08
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 56 3e-08
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 54 1e-07
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 47 2e-05
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 38 0.007
SB_48644| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-21) 31 0.64
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72) 31 1.1
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 30 2.0
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 30 2.0
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 29 2.6
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13) 29 3.4
SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22) 29 3.4
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0) 28 7.9
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 28 7.9
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 72.1 bits (169), Expect = 4e-13
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Frame = +1
Query: 346 PASSINGCSADADARRHKKGP------APL--QQEELCLVCGDRTSGYHYNALTCEGCKG 501
P N D+ ++H +GP AP+ Q +CLVC DR SG HY +TCEGCKG
Sbjct: 700 PTQRYNFYLEDSKMQQHSRGPRYLSLEAPMTTQSIPICLVCNDRASGRHYGVMTCEGCKG 759
Query: 502 FFKRSVTKNAVY 537
FFKRSV +N VY
Sbjct: 760 FFKRSVRRNMVY 771
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = +1
Query: 415 LQQEELCLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAV 534
+ EE C VCGD +SGYHY A TCEGCK FFKR+V + V
Sbjct: 1 MASEEKCAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLV 40
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 62.9 bits (146), Expect = 2e-10
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1
Query: 430 LCLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
LC VCGDR+SG HY TC+GC+GFFKRS+ +N Y
Sbjct: 22 LCRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTY 57
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 61.3 bits (142), Expect = 7e-10
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
CL+C DR +G HY A +C+GCKGFF+RSV KN VY
Sbjct: 10 CLICADRATGKHYGASSCDGCKGFFRRSVRKNHVY 44
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 60.9 bits (141), Expect = 9e-10
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
C VCGD++SG HY TCEGCK FFKRSV +N Y
Sbjct: 243 CAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTY 277
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 60.5 bits (140), Expect = 1e-09
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
C+VC D+ +GYHY TCEGCKGFFKR+V K Y
Sbjct: 823 CVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEY 857
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 59.3 bits (137), Expect = 3e-09
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
C VCGD +G HY + CEGCKGFFKR+V KN +Y
Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIY 76
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +1
Query: 418 QQEELCLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
+QE LC VCGD +SG HY TC+GC GFF RSV ++ VY
Sbjct: 30 KQEILCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVY 69
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 59.3 bits (137), Expect = 3e-09
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1
Query: 424 EELCLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
+ +C +CGDR+SG+HY +CEGCK FFKR+V K Y
Sbjct: 11 QRVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQY 48
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 57.2 bits (132), Expect = 1e-08
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
C VCGD++SG HY TCEGCK FFKRS+ ++ Y
Sbjct: 79 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRSLSY 113
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +1
Query: 322 SSGREELSPASSINGCSADADARRHKKGPAPLQQEELCLVCGDRTSGYHYNALTCEGCKG 501
S+ + E SP + I S + P P+ E +C +C D+ +G HY +CEGCKG
Sbjct: 164 STPKSEASPQAPIK--SPETPPSFSAASPRPVVNE-ICAICLDKATGQHYGVTSCEGCKG 220
Query: 502 FFKRSVTKNAVY 537
FFKRSV Y
Sbjct: 221 FFKRSVQNKKDY 232
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 56.8 bits (131), Expect = 1e-08
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
C VCGDR+SG HY C+GC GFFKRS+ +N Y
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSY 42
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 56.0 bits (129), Expect = 3e-08
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVY 537
C VCGD+++G HY TCEGCK FFKR+V N Y
Sbjct: 57 CAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNY 91
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 54.0 bits (124), Expect = 1e-07
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +1
Query: 415 LQQEELCLVCGDRTSGYHYNALTCEGCKGFFKRS 516
+Q +++C+VCGD+++G HY C+GC GFFKR+
Sbjct: 18 IQDDQVCVVCGDQSTGKHYGVFACDGCSGFFKRT 51
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +1
Query: 433 CLVCGDRTSGYHYNALTCEGCKGFFKRSVTKNAVYI 540
C VC +SG HY TCEGCK FF R+V YI
Sbjct: 22 CAVCSAPSSGRHYGVFTCEGCKCFFNRTVRYKLTYI 57
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 478 LTCEGCKGFFKRSVTKNAVY 537
+TC+GC+GFFKRSV +N Y
Sbjct: 1 MTCDGCRGFFKRSVRRNLAY 20
>SB_48644| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-21)
Length = 364
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 134 MEPSSYGATMTE-SLIIQPSLCWVHAICNSNSYNLSNHIQHHR 259
M P SYG MT+ ++I+ +CW ++ Y +S + H R
Sbjct: 126 MHPFSYGVIMTKKNVILMIMVCWSVSVIQGVPYYISKLLNHER 168
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 31.1 bits (67), Expect = 0.85
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 566 FHRHVQIYQIYTAFLVTLRLKNPLHPSHVSAL*WYPEVLSPQTRHSSSCCRGAGPFLCRL 387
+H +V + + T F+ + R P HV+++ V+SP S CR P LCR
Sbjct: 436 YHVYVVMSPVCTMFMSSCRQCVPCLCRHVASVYHVYVVMSPVCTMFMSSCRQCAPCLCRY 495
Query: 386 ASA 378
++
Sbjct: 496 VAS 498
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 566 FHRHVQIYQIYTAFLVTLRLKNPLHPSHVSAL*WYPEVLSPQTRHSSSCCRGAGPFLCR 390
+H +V + + T F+ R P HV+++ V+SP S CR P LCR
Sbjct: 404 YHVYVVMSPVCTMFMSLCRQCAPCLCRHVASVYHVYVVMSPVCTMFMSSCRQCVPCLCR 462
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 575 HIHFHRHVQIYQ--IYTAFLVTLRLKNPLHPSHVSAL*WYPEVLSPQTRHSSSCCRGAGP 402
H+ RHV + ++T F+ R P +V+++ V+SP S CR P
Sbjct: 29 HVASVRHVYVVMSPVFTMFMSLCRQCAPCLCRYVASVHHVYVVMSPVCTLFMSPCRQCAP 88
Query: 401 FLCRLASA 378
LCR ++
Sbjct: 89 CLCRYVAS 96
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -2
Query: 566 FHRHVQIYQIYTAFLVTLRLKNPLHPSHVSAL*WYPEVLSPQTRHSSSCCRGAGPFLCR 390
+H +V + + T F+ + R P +V+++ V+SP S CR P LCR
Sbjct: 372 YHVYVVMSPVCTMFMSSCRQCAPCLCRYVASVYHVYVVMSPVCTMFMSLCRQCAPCLCR 430
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 557 HVQIYQIYTAFLVTLRLKNPLHPSHVSAL*WYPEVLSPQTRHSSSCCRGAGPFLCRLASA 378
+V + + T F+ + R P HV+++ V+SP S CR P LCR ++
Sbjct: 5 YVVMLSVCTMFMSSCRQCVPCLFRHVASVRHVYVVMSPVFTMFMSLCRQCAPCLCRYVAS 64
>SB_55144| Best HMM Match : CMAS (HMM E-Value=0.72)
Length = 529
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 337 ELSPASSINGCSADADARRHK 399
E SPASSI C +DAD+ R+K
Sbjct: 465 ETSPASSIKCCPSDADSNRYK 485
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 125 RPSMEPSSYGATMTESLIIQPSLCWVHAICNSNSYN 232
RP +P Y T++E+L+ + WV A N +S N
Sbjct: 1858 RPMFDPYCYNTTISENLLPGMPVVWVSAYDNDSSSN 1893
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 95 PWLCRRNPWRRPSM 136
PWLCR+ W RPS+
Sbjct: 162 PWLCRKYKWNRPSL 175
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 194 CWVHAICNSNSYNLSNHIQHHRRSPRCLYQCLPQHRNQKMN 316
CW H + +++ N+ N HHR S + C P H + N
Sbjct: 565 CWPHHL--NSAPNIINCWPHHRNSAPNIINCWPHHLDSSPN 603
>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
Length = 1297
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -3
Query: 664 PIFSKGPSIFP--NPVRPFSLIDHF 596
P++ + P I P NP++PFS+I +F
Sbjct: 437 PLYKRNPGILPQNNPLKPFSIIFNF 461
>SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)
Length = 900
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 122 RRPSMEPSSYGATMTESLIIQPSLCWVHAI 211
R E +S+GAT +L Q S+ W+HA+
Sbjct: 398 RMGEYERNSFGATTVSNLEAQSSMFWLHAV 427
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +1
Query: 385 ARRHKKGPAPLQQEELCLVCGDRTSGYHYNALTCEGCKGFFKR 513
AR H+ + C CG G L C+GC G F +
Sbjct: 98 ARSHQLAVHSYKSPTFCDFCGQMLYGLVRQGLKCDGCGGNFHK 140
>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 945
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 215 NSNSYNLSNHIQHHRRSPRC-LYQCLPQHRNQKMNRCHQVERNFRRLQA 358
N+N +LS+ +Q R SP C + + LP N R + RN+R A
Sbjct: 86 NTNCIDLSSKVQADRSSPFCRIVEQLPSTMNDDFERLY---RNYRTAYA 131
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 27.9 bits (59), Expect = 7.9
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +2
Query: 74 RHWVCHRPWLCRRNPWRRPSMEPSSYGATMTESLIIQPS-LCWVHAICNSNSYNLSNHIQ 250
RH CHRP L RPS + ++ +PS L H SN LS H+
Sbjct: 402 RHHHCHRPLLFNH---LRPSRCLLYHRPRLSNHH--RPSRLLHCHRPRLSNHLRLSRHLH 456
Query: 251 HHRRSPRCLYQCLPQHRNQKMNRCHQVERNFRRL 352
+HRR + +H + R + R RRL
Sbjct: 457 YHRRRLSIHHHPSSRHHHCHRPRLSKHHRPSRRL 490
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,312,562
Number of Sequences: 59808
Number of extensions: 454024
Number of successful extensions: 1480
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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