Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2136
(402 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 1.4
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 27 1.4
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.4
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 1.9
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 3.3
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 4.4
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 4.4
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 25 4.4
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 25 5.8
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 7.7
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 241 LDSKNPVHLALLQRPKLRHHLHKNTLAETSLITKKCFIP-KSQFIVNPNLQ 390
+DS+ + L ++ +L+ KN LA + L + F P + +VNP LQ
Sbjct: 436 IDSRTKLRLPKARKAQLQSMAQKNPLAASGLQSSLSFTPIQGIELVNPLLQ 486
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 124 SLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDVLDSKNPV 261
+LR+A + P V + TV+E +RD V + VVT S++PV
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT-SSKKSESPV 156
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 151 PAVALITPTVSEAMRDRLPPVFSKVVTVDVLDSK 252
P V + +P + D L ++KV+T+DVLD +
Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGR 1471
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 238 VLDSKNPVHLALLQRPKLRHHLHKNTLAE 324
+ D KN +++ LL PKL LHK+ L +
Sbjct: 137 IQDEKN-INIELLDTPKLEKDLHKSELQQ 164
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 238 VLDSKNPVHLALLQRPKLRHHLHKNTLAETSLITKKCFIPKSQFIVNPNL 387
++ NP L L+ K T A S TK +IP I+N ++
Sbjct: 589 IIPQVNPRRLVLIHASTEEKEDMKKTCASLSAFTKDVYIPNYGEIINVSI 638
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 4.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 242 WTQKTRFTWPSSNGQSFGITFTKIHLLKPHSLPKNALF 355
W+ TWP+ NG S + + L PH KN L+
Sbjct: 8 WSDGRSDTWPNVNGHSRTRSVPSLKPL-PHQDSKNLLY 44
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 4.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 88 DSYGLGALVLAHSLRRAGSVYPAVALI 168
+S G L L H+LR+ G+++P A +
Sbjct: 312 NSTEFGWLALTHALRKKGAIFPIHAYL 338
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 4.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 218 PK*SRLTFWTQKTRFTWPSSNGQSFG 295
PK S FW Q+ W + +SFG
Sbjct: 160 PKSSNFGFWDQRLGLEWTYKHIESFG 185
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 207 GKTIPH--SFTDGRCDECYGRVHRAGAAE 127
GK IP + G C +C G V R+G+ E
Sbjct: 129 GKFIPRLKALQKGDCIQCSGNVGRSGSGE 157
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 217 SKVVTVD-VLDSKNPVHLALLQRPKLRHHLHK 309
S ++ +D +L+ N +H AL P+LRH+ +
Sbjct: 90 SAIIHLDQILNLSNYMHYALYCLPRLRHNTER 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,921
Number of Sequences: 5004
Number of extensions: 33575
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -