Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2136
(402 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555 36 0.016
07_03_1743 - 29167078-29167290,29167389-29168159 35 0.028
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 31 0.34
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 31 0.45
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 30 0.60
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 30 0.79
04_04_0765 - 27910189-27912393,27912521-27912598 29 1.4
07_03_0305 - 16475127-16476017,16476058-16478067 28 2.4
01_05_0513 - 22864657-22867899 28 3.2
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 27 4.2
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 27 5.6
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522... 27 7.3
08_01_0793 - 7685702-7686955 27 7.3
02_05_0149 + 26290236-26290880 27 7.3
02_04_0129 + 20020388-20021215 27 7.3
10_08_0347 - 17032996-17033295 26 9.7
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 26 9.7
05_04_0009 + 17102778-17102883,17103083-17103573 26 9.7
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 26 9.7
>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
Length = 614
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 76 LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSE 186
L ++D+Y GA+VLA S+RRAGS V L TVS+
Sbjct: 330 LHSSDTYLCGAIVLAQSIRRAGSTRDLVLLHDHTVSK 366
>07_03_1743 - 29167078-29167290,29167389-29168159
Length = 327
Score = 34.7 bits (76), Expect = 0.028
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 61 RAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRL 204
RA+VT LA + Y G + LA LRR S YP V + P V R +L
Sbjct: 18 RAYVTFLAGDGDYWKGVVGLAKGLRRVRSAYPLVVAVLPDVPGEHRRKL 66
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 31.1 bits (67), Expect = 0.34
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 58 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVD 237
+ A+VTL D + LG VL S+R + V L++ VSE R L V +
Sbjct: 37 DEAYVTLLYGDEFVLGVRVLGKSIRDTDTSRDLVVLVSDGVSEYSRKLLEADGFIVKHIT 96
Query: 238 VLDSKNPV 261
+L + N V
Sbjct: 97 LLANPNQV 104
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 30.7 bits (66), Expect = 0.45
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 64 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDV 240
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S+ R L KV +
Sbjct: 348 AYATILHSASEYVCGAISAAQSIRQAGSTRDLVILVDDTISDHHRKGLEAAGWKVRVIQR 407
Query: 241 LDSKNP 258
+ +NP
Sbjct: 408 I--RNP 411
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 30.3 bits (65), Expect = 0.60
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 16 LELSHETTPGFIMSNR-AWVTLATNDSYGLGALVLAHSLRRAGSV-YPAVALITPTV-SE 186
+ L+H TTP + NR + +A+N LGA H LR A +V P ++L T SE
Sbjct: 299 VHLTHLTTPESVFHNRLGFAAVASNP---LGAAASGHLLRAASAVASPLLSLFASTFRSE 355
Query: 187 AMR-DRL 204
A R D+L
Sbjct: 356 ANRLDKL 362
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 29.9 bits (64), Expect = 0.79
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKV 225
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S R L KV
Sbjct: 323 AYATILHSASEYVCGAITAAQSIRQAGSTRDFVILVDETISNHHRKGLEAAGWKV 377
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 145 VYPAVALITPTVSEAMRDRLPPVFSKVVTVDVLDSKNP 258
V PA + PT+ A D +PP+ S V + ++ +P
Sbjct: 172 VLPACPAVGPTIQTASPDLVPPLASAAVAISPFEAVSP 209
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 28.3 bits (60), Expect = 2.4
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = +1
Query: 16 LELSHETTPGFIMSNRAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSE-A 189
L+L+ PG +N AW++ LA LG + L+ + A S+ +L ++
Sbjct: 165 LDLTSYKGPGLYSTNLAWLSRLANLQHLYLGGVNLSTAFDWAHSLNMLPSLQHLSLRNCG 224
Query: 190 MRDRL-PPVFSKVVTVDVLD-SKNPVH 264
+R+ + PP+ + +++V+D S NP H
Sbjct: 225 LRNAIPPPLHMNLTSLEVIDLSGNPFH 251
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 145 PSRRGGANGPAPELPSRRSRLWPELP 68
P GG N P PE+P R P++P
Sbjct: 172 PEGGGGDNAPPPEVPPEAPRDLPDIP 197
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 292 EALAVGGGPGEPGFLSPERQP*LLWRKLGEDDP 194
EA AVGGG G G+ P+ WR + P
Sbjct: 163 EATAVGGGGGGGGYSYPQPSSPFKWRDMLHHSP 195
>02_05_0061 + 25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 301 GDAEALAVGGGPGEPGFLSPER 236
G+AEA A GGG E GF+ PE+
Sbjct: 1056 GEAEARAHGGG--EEGFMEPEK 1075
>09_06_0055 - 20550889-20551531,20551612-20551889,20552035-20552203,
20552397-20552534,20553945-20553997,20554521-20554574,
20556062-20556295,20556399-20556986,20557065-20557419,
20557494-20557694,20557925-20557998,20558114-20558254,
20558611-20558670,20558750-20558806,20559281-20559318,
20559419-20559578
Length = 1080
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 248 ESRTSTVTTLEKTGGRRSLIASLTVGVMSATAGYTEPARRSEWASTR 108
E RT + + T S ++T TAG +EP R W TR
Sbjct: 1032 ERRTKEIVPVAATVAGSSDEITMTTDQDDVTAGSSEPLDRRNWKLTR 1078
>08_01_0793 - 7685702-7686955
Length = 417
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 163 VLRQGTPSRRGGANGPAPELPSRRSR-LWPELP 68
+L QG+PS++ N P + PS S+ +P+ P
Sbjct: 11 LLNQGSPSQQSSQNSPPTQFPSTFSQSQFPQSP 43
>02_05_0149 + 26290236-26290880
Length = 214
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 307 CEGDAEALAVGGGPGEPGFLSPERQP 230
C GDA+ G G EPG P P
Sbjct: 31 CRGDADGEGDGAGAAEPGKTGPPLPP 56
>02_04_0129 + 20020388-20021215
Length = 275
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 304 EGDAEALAVGGGPGEPGFLSP 242
+GDA A A GP P LSP
Sbjct: 177 DGDAAAFAAALGPARPSILSP 197
>10_08_0347 - 17032996-17033295
Length = 99
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 248 ESRTSTVTTLEKTGGRRSLIASLTVGVMSATAGYTEPARRSEWAST 111
E + T E GGR +A+L G + G PA+ + W T
Sbjct: 54 ERLAAGTTPEEGGGGRYEAVAALVHGGGARVPGVVNPAQLAAWVRT 99
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 304 EGDAE-ALAVGGGPGEPGFLS 245
EGD L GGGPGE G LS
Sbjct: 220 EGDGRLGLGSGGGPGEAGSLS 240
>05_04_0009 + 17102778-17102883,17103083-17103573
Length = 198
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 99 LGSSGAGPFAPPRRLGVPCRSTHHTYRQ*SYEGSSSPSFL 218
+G++ A P RR + HH + Q GSSS S L
Sbjct: 113 IGAAAAPPPPKKRRKAAAAANHHHHHHQQESSGSSSASSL 152
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 FSKVVTVDVLD-SKNPVHLALLQRPKLRHHLHKNTLAETSLI 336
FS+++ + LD SK P +LLQR + LH+NT +T+ +
Sbjct: 1225 FSQLIALKHLDISKCP---SLLQRHVMSEFLHENTTPDTNYL 1263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,162
Number of Sequences: 37544
Number of extensions: 248858
Number of successful extensions: 931
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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