Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2136
(402 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09) 47 7e-06
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 45 3e-05
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13) 36 0.009
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 34 0.038
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 31 0.35
SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004) 31 0.35
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16) 30 0.81
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45) 27 4.3
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 27 5.7
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_32778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_28664| Best HMM Match : Antimicrobial_1 (HMM E-Value=2.6) 26 10.0
>SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)
Length = 347
Score = 46.8 bits (106), Expect = 7e-06
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 55 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVT 231
S AWVTL D Y GAL +AHSLRR + + V ++TP V+ + L V+ V+
Sbjct: 45 SRYAWVTLVMCGDGYAAGALAVAHSLRRVETRHDLVYMVTPDVTHSTYRHLCVVYDHVIE 104
Query: 232 VDVL 243
V +
Sbjct: 105 VQYI 108
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 44.8 bits (101), Expect = 3e-05
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 55 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVT 231
S AWVTL D Y GAL +A SLR + Y V ++TP V+ R L ++ V+
Sbjct: 257 SRCAWVTLVMLGDGYAAGALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIE 316
Query: 232 VDVLDSK 252
V + +
Sbjct: 317 VPYIQHR 323
>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 88 DSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDVLDSK 252
D Y GAL +AHSLR + + V ++TP V+ R L V+ V+ V + K
Sbjct: 4 DGYAAGALAVAHSLRMVQTKHDLVCMVTPDVTNPTRRHLRVVYDDVIEVPYIRQK 58
>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
Length = 310
Score = 36.3 bits (80), Expect = 0.009
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 64 AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDVL 243
AW+T ND + L ALVL +SL++ +A ++ V+ R+ L V +V + L
Sbjct: 91 AWLTALVNDDFALPALVLGYSLQKFSCQKNMIAFVSEDVTSQTREALRKVGWEVQQHERL 150
Query: 244 D 246
D
Sbjct: 151 D 151
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 34.3 bits (75), Expect = 0.038
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 67 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDVLD 246
W++ ND Y + A+VL HS++ V + L++ VS+A L V V +D
Sbjct: 161 WLSALVNDEYVIPAVVLGHSIKTLSCVKKMLVLVSDEVSKASIHALERTGWSVKLVTAMD 220
Query: 247 SK 252
+
Sbjct: 221 CR 222
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 67 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDV 240
W+++ ND Y + A+VL H++R V ++ VS++ + L + V+ +V
Sbjct: 1069 WLSVLVNDEYVIPAVVLGHTIRVFSCVKTMTVFVSNEVSKSGQKALEKTMTVFVSNEV 1126
>SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)
Length = 114
Score = 31.1 bits (67), Expect = 0.35
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 196 DRLPPVFSKVVTVDVLDSKNPVHLALLQRPKL 291
++L V+ + TVD LDS++ +LALL RP+L
Sbjct: 2 EQLLRVWDHLETVDPLDSQDDANLALLSRPEL 33
>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
Length = 491
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 177 GRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI 58
G+C++ Y + + G + +G Q GV G S CS+
Sbjct: 150 GKCEKSYLNIQQVGCDDVLGSGQRVDRCGVCNGDSSTCSV 189
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 69 GNSGHKRLLRLGSSGAGPFAPPRRLGVP 152
G SGHK +L L G PP RL P
Sbjct: 916 GGSGHKVVLHLDCDRDGARQPPERLSSP 943
>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
Length = 638
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 183 TDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQS 73
T G C +CYGR G + G +AVGV+ QS
Sbjct: 491 TQGICAKCYGRNLATGKMTQKG-----EAVGVIAAQS 522
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = -2
Query: 248 ESRTSTVTTLEKTGG-RRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 96
+ RT+ TT KT RR I T +S P+ S WA T PKP
Sbjct: 1748 KGRTTRTTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1803
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = -2
Query: 248 ESRTSTVTTLEKTGG-RRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 96
+ RT+ TT KT RR I T +S P+ S WA T PKP
Sbjct: 1534 KGRTTRTTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1589
>SB_32778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 201 TIPHSFTDGRCDECYGRV-HRAGAAE 127
T P SF+DG D+ G V RA AAE
Sbjct: 25 TFPGSFSDGEFDDIKGAVERRANAAE 50
>SB_28664| Best HMM Match : Antimicrobial_1 (HMM E-Value=2.6)
Length = 92
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 24 VTRDYTRLHNVKSSMGNSGHKRLLRLGSSGAGPFAPPRRLGVPCRST 164
+T D +VKSS+ + HKRL + PR + + CR T
Sbjct: 23 LTADRGNSGDVKSSITGNSHKRLALFPARRVENVFNPRLISIFCRFT 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,038
Number of Sequences: 59808
Number of extensions: 263753
Number of successful extensions: 750
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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