Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2136
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64599-6|AAL11464.1|  284|Caenorhabditis elegans Unidentified vi...    71   2e-13
U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified vi...    71   2e-13
U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified vi...    71   2e-13
Z82052-1|CAB04823.1|  300|Caenorhabditis elegans Hypothetical pr...    67   5e-12
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        28   2.9  
U41009-5|AAO44915.1|  173|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U27312-4|AAA68248.1|  405|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya bind...    27   6.7  
AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRN...    27   6.7  

>U64599-6|AAL11464.1|  284|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform b
           protein.
          Length = 284

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = +1

Query: 58  NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVD 237
           + AW+TLATND+Y  GALVL HSLR AG+      LI+  VS  +R +L   F  V  VD
Sbjct: 2   SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61

Query: 238 VLDSKNPVHLALLQRPKL 291
           V +S +  +L L++RP L
Sbjct: 62  VFNSNDSDNLRLIERPDL 79


>U64599-5|AAM69110.1|  303|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform c
           protein.
          Length = 303

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = +1

Query: 58  NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVD 237
           + AW+TLATND+Y  GALVL HSLR AG+      LI+  VS  +R +L   F  V  VD
Sbjct: 2   SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61

Query: 238 VLDSKNPVHLALLQRPKL 291
           V +S +  +L L++RP L
Sbjct: 62  VFNSNDSDNLRLIERPDL 79


>U64599-4|AAB04562.1|  429|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 5, isoform a
           protein.
          Length = 429

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 37/78 (47%), Positives = 49/78 (62%)
 Frame = +1

Query: 58  NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVD 237
           + AW+TLATND+Y  GALVL HSLR AG+      LI+  VS  +R +L   F  V  VD
Sbjct: 2   SEAWITLATNDNYAQGALVLVHSLRTAGTTRKIHCLISNEVSAPVRKQLEEHFDDVSIVD 61

Query: 238 VLDSKNPVHLALLQRPKL 291
           V +S +  +L L++RP L
Sbjct: 62  VFNSNDSDNLRLIERPDL 79


>Z82052-1|CAB04823.1|  300|Caenorhabditis elegans Hypothetical
           protein T25E12.5 protein.
          Length = 300

 Score = 66.9 bits (156), Expect = 5e-12
 Identities = 39/113 (34%), Positives = 60/113 (53%)
 Frame = +1

Query: 64  AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDVL 243
           AW+TLATND Y  GAL L +SL  +G+      LIT  +S ++R++L   F +V  VD+ 
Sbjct: 4   AWITLATNDRYAQGALTLLNSLHASGTTRRIHCLITNEISNSVREKLVNKFDEVTVVDIF 63

Query: 244 DSKNPVHLALLQRPKLRHHLHKNTLAETSLITKKCFIPKSQFIVNPNLQ*LFQ 402
           +S +  +L+L+ RP L     K      +  +K  F+     I+  N   LF+
Sbjct: 64  NSNDSENLSLIGRPDLGVTFTKFHCWRLTQYSKAVFLDADTMIIR-NSDELFE 115


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 153 RVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI*HYEAGCSLV 28
           RV RAG A R    + +Q   +V  Q++PC     +  C ++
Sbjct: 615 RVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQGDQQRACEII 656


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 153 RVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI*HYEAGCSLV 28
           RV RAG A R    + +Q   +V  Q++PC     +  C ++
Sbjct: 552 RVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQGDQQRACEII 593


>U41009-5|AAO44915.1|  173|Caenorhabditis elegans Hypothetical
           protein C06E7.1d protein.
          Length = 173

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/78 (21%), Positives = 38/78 (48%)
 Frame = +1

Query: 67  WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLPPVFSKVVTVDVLD 246
           W+     +S+ LG L++ +S++   S+      +  + +  ++  L   ++++VT+   +
Sbjct: 97  WLITLCQESHFLG-LLIKYSIQFQDSITRHAMFLLHSNNNHLKSLLESTWTRIVTMSEPE 155

Query: 247 SKNPVHLALLQRPKLRHH 300
            K      LL +PK R H
Sbjct: 156 IKELCLDMLLMKPKKRCH 173


>U27312-4|AAA68248.1|  405|Caenorhabditis elegans Hypothetical
           protein F26A1.8 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 43  GFIMSNRAWVTLATNDSYGLGALVLAHSLRRAGSV 147
           GF+ +  AW  +A      LG  V   +L +AGS+
Sbjct: 348 GFLCTKPAWQLIAVGGCIILGGFVFFSALSKAGSI 382


>U23450-1|AAK31467.2|  422|Caenorhabditis elegans Cpeb polya binding
           family protein 2 protein.
          Length = 422

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 195 PHSFTDGRCDECYGRVHRAGA 133
           P+ F +  C+EC GR HR  A
Sbjct: 365 PYFFHNQSCEECSGRYHRQHA 385


>AB096632-1|BAC76732.1|  500|Caenorhabditis elegans methionyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
 Frame = +1

Query: 139 GSVYPAVALITPTVSEAMRDRLPPVFSKVVT------VDVLDSKNPVHLALLQR--PKLR 294
           GS     AL   +  +   DR+   FS + T       + + + +P HL  +Q    K++
Sbjct: 39  GSKIFQAALAAKSTPKQFCDRVSSKFSDLFTDLELSHTNFIRTTDPAHLEAVQHFWMKIQ 98

Query: 295 H--HLHKNTLAETSLITKKCFIPKSQFI 372
              +++K+T +    IT +CFIP+   +
Sbjct: 99  DNGYIYKSTYSGYYSITDECFIPEEDVV 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,500,621
Number of Sequences: 27780
Number of extensions: 193706
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)