Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2136
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   0.56 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   0.99 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 304 EGDAEALAVGGGPGEPGFLSPE 239
           E   EA A  G  G PG+LSPE
Sbjct: 61  EVQGEAQAWFGFAGTPGYLSPE 82


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 163 VLRQGTPSRRGGANGPAPELPSRR 92
           +LRQG P    GA G   ++P  R
Sbjct: 56  LLRQGVPGHHYGAAGSQQDMPYPR 79


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 204 KTIPHSFTDGRCDECYGRVHR 142
           K+  + FT+ RCD  Y R  +
Sbjct: 287 KSSDYGFTECRCDPGYFRAEK 307


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
 Frame = +1

Query: 22  LSHETTPGF--IMSNRAWVTLATND--SY--GLGALVLAHSLRRAGSVYPAVALITPTVS 183
           L +  TP    +     W+   T    SY  GLGALV   S  +  +     ALI  TV+
Sbjct: 263 LKYYVTPNLSKLSDPEVWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVN 322

Query: 184 EAMRDRLPPVFSKVVTVDVLDSKNPVHLALLQRPKLRHHLHKNTLAE 324
                    V   VV     + + PV    +  P L   ++ + + E
Sbjct: 323 SCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVYPSAVLE 369


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 334 ITKKCFIPKSQFIVNPNLQ*LFQ 402
           I  K  I  S+F++NP+ Q L Q
Sbjct: 604 IIPKLQIALSEFVINPHQQHLDQ 626


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 102 GSSGAGPFAPPRRLGVPCRSTHHTYRQ*SYEGSSSPSFLQS 224
           G  GA P   P ++ +   S  H  +Q   +   SP+ LQS
Sbjct: 50  GPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPTQLQS 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,486
Number of Sequences: 438
Number of extensions: 2400
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)