Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2133
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   3.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   3.5  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    24   6.1  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    24   8.0  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 77  LEDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHP-GRSFSPNHSRRGP 229
           L  R  S     + +PY D  + +     R +     P GRS SP++ RR P
Sbjct: 113 LRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSP 164


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 289 TFGYKAADGSFKEETKGPD 345
           TFGY     SF   TK PD
Sbjct: 429 TFGYSLFSSSFLSHTKNPD 447


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 151 HLGGHSVYIWSRIGQPER 98
           HL GHS+ I+S + +PER
Sbjct: 542 HLRGHSLRIYSVLYEPER 559


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 93  VHLSSSSAILGLVLIIVRVFHLLQTRPGSSA 1
           V LS  ++ILG  +  + V HL++T    SA
Sbjct: 355 VDLSEGTSILGCEMTDIGVHHLIETMKWMSA 385


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 67  DSRAGGQVYQLVPADQYDSIYRQNDRQDEE 156
           DS    Q+   +P  Q DS+ R  D+ DEE
Sbjct: 640 DSLVPTQLDSTIPT-QIDSVQRNKDQDDEE 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,765
Number of Sequences: 5004
Number of extensions: 26549
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)