Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2133
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 28 2.5
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594... 28 2.5
03_02_0899 + 12257831-12257858,12258490-12258561,12259121-122604... 27 3.3
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 27 4.3
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 27 4.3
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029... 27 5.7
07_01_1087 - 9959933-9960212,9960292-9960462,9960545-9961365,996... 27 5.7
04_03_0489 + 16503325-16503747,16503916-16503978 27 5.7
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430... 27 5.7
01_04_0116 + 16189250-16189411,16189577-16190104 27 5.7
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466... 26 7.6
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 27.9 bits (59), Expect = 2.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 71 AELEDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHPGRSFSPNH 214
A+LE C S L T ID K+ S+D+ +G H FSP H
Sbjct: 428 ADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAH---FFSPAH 472
>01_01_0769 -
5944910-5946613,5946768-5946887,5948243-5948300,
5948544-5948627,5949356-5949456,5949562-5949745,
5950746-5950774,5951134-5951226
Length = 790
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 152 KSMSRDQFSGCHPGRSFSP 208
KS S DQ S HPG FSP
Sbjct: 542 KSQSGDQLSSQHPGNVFSP 560
>03_02_0899 +
12257831-12257858,12258490-12258561,12259121-12260413,
12260593-12261224
Length = 674
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 121 SRIGQPERAGTPVLQLCYPGPGSHNRKSLPP 29
S +G P G P+ + P P S SLPP
Sbjct: 251 SFLGNPGLCGPPLAECSLPSPTSSPESSLPP 281
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = -2
Query: 87 LSSSSAILGLVLIIVRVFHLLQTRPGSS 4
L+S++ LGL L+ + +F LL+ +PG++
Sbjct: 7 LASAAINLGLALVALSLFSLLKKQPGNA 34
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 71 AELEDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHPGRSFSPNH 214
++LE C S L T ID K+ S+D+ G H FSP H
Sbjct: 413 SDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRIVGAH---FFSPAH 457
>11_05_0033 +
18500092-18501372,18502419-18502826,18502948-18502990,
18503236-18503282,18504582-18505901
Length = 1032
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 155 SMSRDQFSGCHPGRSFSPNHSRRGPSS 235
S+S FS P RS +P+H RR +S
Sbjct: 18 SLSSPTFSTSSPSRSPAPHHDRRNSTS 44
>07_01_1087 -
9959933-9960212,9960292-9960462,9960545-9961365,
9961985-9962455
Length = 580
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 250 IRNYNKVNDDGSFTFGYKAADGSFKEETKGPDCVL 354
+R KVN DGS TF K +D +E CVL
Sbjct: 131 VRARGKVNPDGSVTFENK-SDAVVYQELGAAQCVL 164
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 112 GQPERAGTPVLQLCYPGPGSHNRKSLPPAANEAWV 8
G+P A P + Y +H R LPP + WV
Sbjct: 85 GRPAAAAPPAIDSRYCAVIAHARDLLPPHRSAGWV 119
>03_05_0976 -
29341981-29342229,29342388-29342621,29342771-29343046,
29343181-29343457,29343549-29343847,29344021-29344152,
29344451-29344660,29344812-29344875,29346114-29346260,
29346477-29346760
Length = 723
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 168 SLLILFILAVILSIYGVVLVSRNELVHLSSSSAILGLVLIIVR 40
+L ++ I A IL Y +SR L H++ S G +IVR
Sbjct: 151 ALYVITISACILLYYEYKYISRKRLAHITGSPPGPGHFSVIVR 193
>01_04_0116 + 16189250-16189411,16189577-16190104
Length = 229
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 35 KTLTIMRTRPRI-AELEDRCTSSFRLTNTTPYIDRMTAKMKSMSR 166
++ T+ R+ P + + LE+R TSS R + TT T + S++R
Sbjct: 78 RSSTVSRSPPTLRSSLEERSTSSRRCSGTTSLCPTHTPCIASLAR 122
>09_04_0574 +
18645363-18645870,18645995-18646491,18646631-18646696,
18646921-18646989,18647401-18647466
Length = 401
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 118 RIGQPERAGTPVLQLCYPGPGSHNRKSLPPAANEA 14
R G P+ A VL G G H+ K PAA+ A
Sbjct: 66 RPGSPDHAADTVLARFLAGHGGHDNKPPRPAAHFA 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,160,589
Number of Sequences: 37544
Number of extensions: 225539
Number of successful extensions: 545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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