Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2133
(358 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 31 0.21
SB_53479| Best HMM Match : Zot (HMM E-Value=1.1) 29 0.84
SB_30162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0) 28 1.9
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14) 28 1.9
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047) 28 2.6
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0) 27 4.5
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 27 5.9
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 27 5.9
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45) 26 7.8
SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 26 7.8
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_23363| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_4955| Best HMM Match : rve (HMM E-Value=7.5e-09) 26 7.8
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 31.5 bits (68), Expect = 0.21
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 170 GLCSYSSSWRSFCLYMESYWSAGTSWYTCPPA 75
GLCS S +R FC+YME+ + G + PP+
Sbjct: 643 GLCS--SCYRRFCIYMETTYGGGGNTSPIPPS 672
>SB_53479| Best HMM Match : Zot (HMM E-Value=1.1)
Length = 251
Score = 29.5 bits (63), Expect = 0.84
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +2
Query: 32 WKTLTIMRTRPRIAELEDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHPGRSFSPN 211
W+ + TR + D T+ ++ TT I R++ + +M+ D +G H G + PN
Sbjct: 135 WQDNILTFTRLELNLRGDITTTLHCVSATTAGIQRLSHQ--AMTGDPRAGVHCGPAPPPN 192
Query: 212 HS--RRGPSSLQCRLLETITR*TMME 283
HS R PSS T MME
Sbjct: 193 HSVITRAPSSCVAGSTYTSAEIEMME 218
>SB_30162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 1.9
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 32 WKTLTIMRTRPRIAELEDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHPGRSFSPN 211
W+ + TR + D T+ ++ TT I R++ + +M+ D +G H G + PN
Sbjct: 29 WQDNILTFTRLELNLRGDITTTLHCVSATTAGIQRLSHQ--AMTGDPRAGVHCGPAPPPN 86
Query: 212 HS--RRGPSS 235
HS R PSS
Sbjct: 87 HSVITRAPSS 96
>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
Length = 1013
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/71 (28%), Positives = 27/71 (38%)
Frame = +2
Query: 143 AKMKSMSRDQFSGCHPGRSFSPNHSRRGPSSLQCRLLETITR*TMMEALHSVTRLRMGPS 322
+ M M FSG P R H+ GP + + T + + TR M S
Sbjct: 812 SNMAVMELGVFSGFTPDRESVAKHAYNGPRGRSQPMAARVQYATRSLSANGSTRTIMLRS 871
Query: 323 RRKPKAPTVSY 355
R +P A V Y
Sbjct: 872 RSQPMAARVQY 882
>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
Length = 925
Score = 28.3 bits (60), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 158 YSSSWRSFCLYMESYWSAGTSWYT 87
YS R F Y + W GT+WY+
Sbjct: 528 YSKLTRRFSSYQVAVWGKGTNWYS 551
>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
Length = 660
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 76 LCYPGPGSHNRKSL 35
LCYPGPG++N+ +L
Sbjct: 647 LCYPGPGAYNQLNL 660
>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
Length = 780
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 248 VCTGGCLGPSCCGWG*SFCRD 186
VC G + SCCG +FCR+
Sbjct: 258 VCLRGAVVASCCGVSLAFCRE 278
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +2
Query: 191 GRSF-SPNHSRRGPSSLQCR 247
G SF SPN+ R PS+++CR
Sbjct: 339 GASFRSPNYPERSPSNMRCR 358
>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 808
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 136 SVYIWSRIGQPERAGTPVLQLCYPGPGS 53
SV R+G+P+R+ P ++L Y G G+
Sbjct: 737 SVCETERVGRPQRSRAPPVRLAYDGYGN 764
>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1123
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = -2
Query: 150 ILAVILSIYGVVLVSRNELVHLSSSSAILGLVLIIVRVFHLL 25
+ ++IL + VV+ + + L+ + ILG++ ++V VF+L+
Sbjct: 917 VFSLILCMVAVVIFTGHILLSIIVMLTILGVLCLVVGVFYLV 958
>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
Length = 936
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 357 G*DTVGAFGFLLEGPIRSLVTECKASIIVHLVI 259
G ++ GA+GF+ + P LV + SI+V +
Sbjct: 294 GDESFGAYGFVTKDPAELLVKTMRKSIVVEFFL 326
>SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 350
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 117 VLVSRNELVHLSSSSAILGLVLIIVRVFHLLQTR 16
V++++ L S AILG +L+I VFH+ + R
Sbjct: 206 VIITKAVCTGLVSLVAILGNILVISAVFHVKRMR 239
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Frame = -2
Query: 171 WSLLILFILAVILSIYGV-------VLVSRNELVHLSSSSAILGLVL--IIVRVFHLLQT 19
WSL+I +IL+ + + GV V+V +N +H + + ++ L + I V VF+++ T
Sbjct: 40 WSLVIRYILSSAIFLVGVVGNILVCVVVYKNHRMHTAMNMFLVNLAVCDIFVCVFNIIFT 99
>SB_23363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 28 QVEDSYDYENQAQDSRAGGQVYQLVP 105
+V++ +Y+N Q+S +GG+ + P
Sbjct: 229 EVQNQQEYDNDVQESESGGEAAEKCP 254
>SB_10860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1292
Score = 26.2 bits (55), Expect = 7.8
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 28 QVEDSYDYENQAQDSRAGGQVYQLVP 105
+V++ +Y+N Q+S +GG+ + P
Sbjct: 1231 EVQNQQEYDNDVQESESGGEAAEKCP 1256
>SB_4955| Best HMM Match : rve (HMM E-Value=7.5e-09)
Length = 667
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 10 PRPRLQQVEDSYDYENQAQDSRAGGQVYQLVPADQYDSIYRQNDRQDEEYEQR 168
P P++ V SYD + Q+ A++Y + Q +R E +QR
Sbjct: 135 PGPKIIMVMMSYDVPGPKIIMEENKREIQIAEAEKYKLKFEQEERLHREVQQR 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,046,770
Number of Sequences: 59808
Number of extensions: 235636
Number of successful extensions: 538
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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