Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2132
         (566 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    24   0.79 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.3  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   7.3  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.7  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 RRNNLNSCVFPSLRSCTWNPRWRWR 253
           ++ ++   V P++R+CT +  WR R
Sbjct: 238 QQEDIEMFVMPTVRNCTGDTSWRVR 262


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -1

Query: 44  QQQTVQRDSEIKNK 3
           QQQ+V++ S++KNK
Sbjct: 133 QQQSVEKSSKLKNK 146


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 457 VLGPSGTPVLT 489
           VLGP+G+P LT
Sbjct: 148 VLGPTGSPPLT 158


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 457 VLGPSGTPVLT 489
           VLGP+G+P LT
Sbjct: 150 VLGPTGSPPLT 160


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 285 HQERQEQPQPGLHRHRGF 232
           H  +Q+Q Q G H H+ +
Sbjct: 53  HHIQQQQLQYGYHNHQNY 70


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 285 HQERQEQPQPGLHRHRGF 232
           H  +Q+Q Q G H H+ +
Sbjct: 53  HHIQQQQLQYGYHNHQNY 70


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 285 HQERQEQPQPGLHRHRGF 232
           H  +Q+Q Q G H H+ +
Sbjct: 53  HHIQQQQLQYGYHNHQNY 70


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 285 HQERQEQPQPGLHRHRGF 232
           H  +Q+Q Q G H H+ +
Sbjct: 53  HHIQQQQLQYGYHNHQNY 70


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = -1

Query: 449 LIINGPDFWMMSSDDMKPRGXXXXXXXXXDNETQGGKPLKLMKP 318
           L + G   W + +DD +             ++T GG   ++++P
Sbjct: 349 LNLGGVMIWSIETDDFRGVSGTKYPILKAIHQTLGGSSNEIVEP 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,669
Number of Sequences: 336
Number of extensions: 2252
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)