Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2132
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672...    32   0.37 
03_04_0153 + 17745473-17745889,17746120-17746272,17747307-177475...    31   0.48 
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    29   3.4  
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375...    28   4.5  
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283...    28   6.0  
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476     28   6.0  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   6.0  
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883...    27   7.9  

>02_05_0969 + 33165396-33165935,33166352-33166883,33166988-33167242,
            33167515-33167606,33167745-33167942,33168049-33168240,
            33168341-33168562,33168858-33169024,33169117-33169210,
            33169308-33169364,33169459-33169587,33169681-33169752,
            33170180-33170293,33170419-33170580,33170666-33170794,
            33171057-33171158,33171266-33171342,33171470-33171592,
            33171666-33172227
          Length = 1272

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 172  AYTLGGDYXXXXXXXXXXXXXKHDPYAYLPLSRTNLNKR--KKSVNSKQFKGIVKSKTK 2
            AYT G DY             K DPYAY PL R  LN+R  +K+   K    ++K   K
Sbjct: 1189 AYT-GHDYTSKKASGDLKKKDKMDPYAYWPLDRKLLNRRSDRKAAARKGMSSVMKVTKK 1246


>03_04_0153 +
           17745473-17745889,17746120-17746272,17747307-17747512,
           17747752-17747959
          Length = 327

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 209 PSLRSCTWNPRWRWRP 256
           P LR C W PR RWRP
Sbjct: 22  PQLRLCNWAPRPRWRP 37


>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
            14847177-14847324,14847998-14848097,14848306-14848384,
            14848527-14848687,14848829-14848908,14849319-14849475,
            14849575-14849723,14849909-14850076,14850426-14850719,
            14851002-14851046,14851213-14851462,14851707-14851835,
            14852799-14853039,14853977-14854642
          Length = 1066

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 327  YEARNETALRRHLEHQERQEQPQPGLHRHRG 235
            ++ R  ++ RR  EHQE QE+P+    R  G
Sbjct: 1017 FKRRPSSSSRREREHQEAQEEPRRSRERRGG 1047


>09_03_0097 +
           12335425-12336197,12336438-12336618,12337409-12337572,
           12338132-12338393,12338488-12338604
          Length = 498

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 342 AALGFVVCIIDVQVNIAPGLHIVGRHHPKVWSVDDESARLG 464
           A L   V + D+  N    L  V RHHP    + D  +RLG
Sbjct: 455 ALLACTVPVRDILANTIISLQDVNRHHPHCLKIFDILSRLG 495


>06_01_0394 -
           2835438-2835896,2836664-2836913,2837197-2837669,
           2838941-2840608
          Length = 949

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 320 PGTKRRYDDILSIRSGRSNRSRASTATVGSKYKTGGKGIHRNLDYCGVCSVY 165
           P T RR+  ++ +  G+  + RA  A VGS        ++ + DY G   V+
Sbjct: 129 PSTSRRWPFLVRVARGQHAQMRAVAAVVGSWQWRRVAVLYEDADYGGGAGVF 180


>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
          Length = 676

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 347 GGKPLKLMKPGTKRRYDDILSIRSG-RSNRSRASTATVGSKYKTGGKGIHR 198
           GG PL  M+    RR DD    R G  S+ SR+ +    S  +  G+G+HR
Sbjct: 140 GGNPLSDMR--CPRRGDDSSMERGGGSSSSSRSLSREPSSAVQERGRGLHR 188


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 359 NETQGGKPLKLMKPGTKRRYDDILSIRSGRSNRSRASTATVGSKYKT 219
           N T G   LK  K  TKR+Y D++   S   N         GS + T
Sbjct: 421 NHTVGEDGLKSSKNKTKRKYSDVVDDGSSLMNWLNGKKKRTGSVHHT 467


>03_02_0489 +
           8836306-8836500,8836906-8837082,8837175-8837321,
           8837636-8837737,8837824-8837894,8837992-8838059,
           8838595-8838836
          Length = 333

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 306 ALRRHLEHQERQEQPQPGLHRHR 238
           A RR+   Q++Q+ P P LH H+
Sbjct: 9   AARRYSTQQQQQQPPPPQLHHHQ 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,424,707
Number of Sequences: 37544
Number of extensions: 279153
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)