Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2132
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19535| Best HMM Match : HEAT (HMM E-Value=1.1)                      44   7e-05
SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  

>SB_19535| Best HMM Match : HEAT (HMM E-Value=1.1)
          Length = 368

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -2

Query: 103 DPYAYLPLSRTNLNKRKKSVNSKQFKGIVKSKTK 2
           DPYAYLPL+ + LN+RK+   + QFKGIV++  K
Sbjct: 322 DPYAYLPLNMSTLNRRKQRKVAGQFKGIVRASKK 355


>SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 327 KLQRLAALGFVVCIIDVQVNIAPGLHIVG 413
           +L  LA LG+VV +ID + +   GLH  G
Sbjct: 94  RLHTLAMLGYVVVVIDGRGSAQRGLHFEG 122


>SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 500 SRSGVSTGVPDGPKTGRLIING 435
           S S +S GVP+G   G L+ING
Sbjct: 48  SLSSISYGVPEGSLLGPLLING 69


>SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 423 PKVWSVDDESARLGAVRNPRTYSAATSLNHSLIAS 527
           P V+S +DES    +V++P   +   S  HSL AS
Sbjct: 170 PSVFSEEDESTARSSVQSPIYSTDTASTCHSLFAS 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,701
Number of Sequences: 59808
Number of extensions: 307410
Number of successful extensions: 944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)