Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2132
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     29   3.1  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 399 LHIVGRHHPKVWSVDDESARLGAVRNPRTYSAATSLNHSLIASWIP 536
           L  VG H PK    +   A+L  +  P+ Y ++ SL   L  S IP
Sbjct: 122 LDSVGYHEPKECRTETPGAKLLGLIAPKDYESSMSLGKFLSVSAIP 167


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 399 LHIVGRHHPKVWSVDDESARLGAVRNPRTYSAATSLNHSLIASWIP 536
           L  VG H PK    +   A+L  +  P+ Y ++ SL   L  S IP
Sbjct: 122 LDSVGYHEPKECRTETPGAKLLGLIAPKDYESSMSLGKFLSVSAIP 167


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 209 GIHRNLDYCGVCSVYAGR*LRTEESQGRYQEEG 111
           G  +N+ YC    V  G  L+ EE QG Y + G
Sbjct: 93  GTWQNVQYCPDDKVIVGFSLKVEELQGNYDDAG 125


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 209 GIHRNLDYCGVCSVYAGR*LRTEESQGRYQEEG 111
           G  +N+ YC    V  G  L+ EE QG Y + G
Sbjct: 93  GTWQNVQYCPDDKVIVGFSLKVEELQGNYDDAG 125


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
           protein Y26D4A.14 protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 342 QAFEAYEARNETALRRHLE----HQERQEQPQPGLHRHRGFQVQDRREGNTQ 199
           Q  E YE RN+  LRR  E    +QER++Q      + +  ++Q   E   Q
Sbjct: 207 QQLEEYEKRNQEILRREEEIKQQNQEREKQINDDFEKRKQEKLQREEEMKQQ 258


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 303 LRRHLEHQERQEQPQPGLHRHRGFQVQDR 217
           L  HL+   +  Q  PGL+R  GF+V+ R
Sbjct: 166 LNNHLQFVVKYHQHTPGLYRVVGFEVRPR 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,730,022
Number of Sequences: 27780
Number of extensions: 219140
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)