Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2129
         (322 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2KM70 Cluster: CpsH; n=1; Streptococcus iniae|Rep: Cps...    31   3.7  
UniRef50_Q4GYV9 Cluster: Putative uncharacterized protein; n=1; ...    31   3.7  
UniRef50_A7NUR8 Cluster: Chromosome chr18 scaffold_1, whole geno...    30   8.6  

>UniRef50_Q2KM70 Cluster: CpsH; n=1; Streptococcus iniae|Rep: CpsH -
           Streptococcus iniae
          Length = 340

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 156 KLKNEKQKKNSTRYFFTSL*KNFLFFFYSRPKKPF 260
           K  N  +K N   YFF  L   F+F+FY   KK F
Sbjct: 188 KFVNYSKKNNLKFYFFNFLQGKFMFYFYKIVKKDF 222


>UniRef50_Q4GYV9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 111

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 162 KNEKQKKNSTRYFFTSL*KNFLFFFYSRPKKPF 260
           K EK++K     +F  L   FLFFF+ + K PF
Sbjct: 9   KKEKKRKEKIHVYFVFLSFPFLFFFFKKIKIPF 41


>UniRef50_A7NUR8 Cluster: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence; n=14; Magnoliophyta|Rep: Chromosome
           chr18 scaffold_1, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 351

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 111 ALVCHIWVLITYFFCKLKNEKQKKNST 191
           +L   +W  ++YF+ ++K+ K+KKN T
Sbjct: 314 SLALSLWGFVSYFYGEIKDSKKKKNPT 340


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,520,508
Number of Sequences: 1657284
Number of extensions: 3003029
Number of successful extensions: 5248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5242
length of database: 575,637,011
effective HSP length: 83
effective length of database: 438,082,439
effective search space used: 10075896097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)