Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2129
         (322 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    19   9.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +3

Query: 147 FFCKLKNEKQKKNSTRYF---FTSL*KNFLFF 233
           F  KL   K+    +RYF   F S+ K  LFF
Sbjct: 280 FIKKLGKIKENLEQSRYFIYMFVSVWKCLLFF 311


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +3

Query: 147 FFCKLKNEKQKKNSTRYF---FTSL*KNFLFF 233
           F  KL   K+    +RYF   F S+ K  LFF
Sbjct: 280 FIKKLGKIKENLEQSRYFIYMFVSVWKCLLFF 311


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +3

Query: 147 FFCKLKNEKQKKNSTRYF---FTSL*KNFLFF 233
           F  KL   K+    +RYF   F S+ K  LFF
Sbjct: 280 FIKKLGKIKENLEQSRYFIYMFVSVWKCLLFF 311


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +3

Query: 147 FFCKLKNEKQKKNSTRYF---FTSL*KNFLFF 233
           F  KL   K+    +RYF   F S+ K  LFF
Sbjct: 280 FIKKLGKIKENLEQSRYFIYMFVSVWKCLLFF 311


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 135 EPKYGIPTL 109
           + KYG+PTL
Sbjct: 201 DEKYGVPTL 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,189
Number of Sequences: 336
Number of extensions: 811
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6048897
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)