Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2129
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   2.8  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   6.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    24   6.6  

>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +1

Query: 196 IFLLPFKKI-SFFFFTPDPKNP 258
           + LLPF  +   F FTPDP  P
Sbjct: 367 LMLLPFPAVVKKFHFTPDPARP 388


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 145 IFFVXXXXXXXXXIPPDIFLLPFKKISFFFF 237
           I F          +PP +FLL FK  S  FF
Sbjct: 101 ILFASSLPIQFIALPPTVFLLFFKFYSRLFF 131


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 181  FFCFSFFNLQKK*VIRTQIW 122
            F+C  F N   +  +RT+IW
Sbjct: 962  FYCIGFKNATPEYTLRTRIW 981



 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 196  IFLLPFKKISFFFFTPDPKNP 258
            + L+P   +S+FF    P NP
Sbjct: 1605 LMLVPLTLVSYFFIDSQPGNP 1625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 971,972
Number of Sequences: 5004
Number of extensions: 14188
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)