Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2128
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    69   3e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    43   2e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    43   3e-05
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    32   0.053
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    31   0.12 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   1.1  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   1.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.0  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    25   6.1  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    25   8.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   8.1  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   8.1  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = -2

Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
           GG ILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 342 GGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375



 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = -1

Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
           PGI DR +K + Q   P +MK+KI APPERKYSVW+G
Sbjct: 307 PGIADRMQK-EIQALAPSSMKVKIVAPPERKYSVWIG 342


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = -2

Query: 376 WGG*ILASLSTFQQMWISKQEYDESG 299
           +GG ILASL  FQ +W+SKQEYDE G
Sbjct: 393 FGGSILASLDNFQHLWVSKQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
 Frame = -2

Query: 373 GG*ILASLSTFQQMWISKQEYDESGP---SIVHRKC 275
           GG IL+SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 397 GGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 31.9 bits (69), Expect = 0.053
 Identities = 15/34 (44%), Positives = 26/34 (76%)
 Frame = -2

Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
           GG ILASLSTF+++ I+ +EY ++  +++ R+ F
Sbjct: 347 GGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 422 KIKIFAPPERKYSVWMG 372
           ++KI+A PER ++ W+G
Sbjct: 331 QVKIYASPERMHNAWLG 347


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 471 RPEKKRKIPVPPPIDNED*DLCSSRKKVLRMDGVDRSS-PPFLPSNRCGSRNRSTTS--- 304
           R E  R++  PPP    + D  ++RK+       D SS   F PSN  G+ N S  +   
Sbjct: 468 REEYPRRLSNPPPSQKTNQDAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNTSENADEL 527

Query: 303 LAPPL 289
           + PP+
Sbjct: 528 VEPPI 532


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 474 PRPEKKRKIPVPPPIDNED*DLCSSRKKVLRMDGVDRSSPPFLPS 340
           P P +K++  VP P +N++  L     + L    +D+  P  LPS
Sbjct: 339 PSPSEKKQDRVPSPSNNKEDHLPLLSDEKLDKSAIDKIEPTPLPS 383


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 396 FWRSKDLNLHCQWGGELGFSFFFPVGDS 479
           F++S DLN  C W  +L FS +  VGDS
Sbjct: 187 FFKSFDLN--CSWVVQLSFSSWNVVGDS 212


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 290  CTQEVFLNAPGVAASSSPGRVAQFRLVISVNLIVRKI 180
            C   + L+AP +  + +PG + +F+L  ++  + R I
Sbjct: 1973 CQSPILLDAPTIFVTMNPGYLGRFKLPSNLKKLFRPI 2009


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 373 GG*ILASL-STFQQMWISKQEYDESG 299
           GG +LA + +    MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 376 WGG*ILASLSTFQQMWISKQEYDESGPSIVHR 281
           +GG +LA    F     +K +Y+E G SI  R
Sbjct: 388 FGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 352  LSTFQQMWISKQEYDESGPSIV 287
            L  + + W  KQ++DES  S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 398 ERKYSVWMGWIDPRLPFYLPTDVDLETGVRRV 303
           +RK  +  G I  RLP +L T V L T   R+
Sbjct: 56  DRKVELPNGSIHKRLPSWLKTKVPLGTNFNRI 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,623
Number of Sequences: 5004
Number of extensions: 46438
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)