Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2128
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 71 7e-13
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 70 9e-13
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 70 9e-13
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 70 1e-12
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 70 1e-12
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 67 8e-12
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 67 8e-12
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 66 1e-11
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 54 5e-08
12_02_1282 + 27528159-27529148,27529549-27529614 50 1e-06
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 44 7e-05
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 33 0.16
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 29 1.5
05_05_0137 - 22641577-22642119 29 2.6
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 28 4.6
12_02_0756 + 22839673-22839870,22839961-22842194,22842280-228425... 27 6.1
01_01_0811 + 6303898-6304141,6304254-6304621,6304692-6304956,630... 27 6.1
09_03_0064 + 11990320-11990431,11991114-11991289 27 8.1
07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428... 27 8.1
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 27 8.1
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 70.5 bits (165), Expect = 7e-13
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 341 GGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 374
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 306 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 341
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 70.1 bits (164), Expect = 9e-13
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 344 GGSILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 70.1 bits (164), Expect = 9e-13
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 344 GGSILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 347 GGSILASLSTFQQMWISKAEYDESGPAIVHRKCF 380
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 312 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 347
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 344 GGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 66.9 bits (156), Expect = 8e-12
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct: 344 GGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 66.9 bits (156), Expect = 8e-12
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 343 GGSILASLSTFQQMWISKAEYDESGPGIVHMKCF 376
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 308 PGIGDRMSKEITALAPG-SMKIKVVAPPERKYSVWIG 343
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 343 GGSILASLSTFQQMWISKGEYDESGPGIVHMKCF 376
Score = 48.0 bits (109), Expect = 4e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MK+K+ APPERKYSVW+G
Sbjct: 308 PGIADRMSKEITSLAPS-SMKVKVIAPPERKYSVWIG 343
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 54.4 bits (125), Expect = 5e-08
Identities = 31/48 (64%), Positives = 32/48 (66%), Gaps = 14/48 (29%)
Frame = -2
Query: 373 GG*ILASLSTFQQ--------------MWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQ MWISK EYDESGP+IVHRKCF
Sbjct: 344 GGSILASLSTFQQVNLTPTLYEVARMQMWISKGEYDESGPAIVHRKCF 391
Score = 47.6 bits (108), Expect = 5e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR K + P +MKIK+ APPERKYSVW+G
Sbjct: 309 PGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIG 344
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = -2
Query: 361 LASLSTFQQMWISKQEYDESGPSIVHRKCF 272
LA S +MWI+K EYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKMWIAKAEYDESGPSIVHRKCF 351
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 44.0 bits (99), Expect = 7e-05
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILA + Q ++K +YDE+GPSIVH+KCF
Sbjct: 365 GGAILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 398
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQE 314
GG ILASL +FQQMW SK +
Sbjct: 450 GGSILASLGSFQQMWFSKAD 469
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 483 PWNPRPEKKRKIPVPPPIDNED*DLCSSRKKVLRMDGVDR-SSPPFLPSN-RC 331
P PR K+ PPP D+E+ + ++ R DR SPP LP + RC
Sbjct: 240 PAQPRRRKRAATSDPPPEDDEEEGTPAPPRRRRRRKAGDRGDSPPPLPDHLRC 292
>05_05_0137 - 22641577-22642119
Length = 180
Score = 28.7 bits (61), Expect = 2.6
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 226 ATRPGLLEAATPGAFKNTSCVQWRGQTRRTPVSRSTSVGR*KGRRGSIHPIHTEYFLSGG 405
ATR + AA + + SCV+ RG+ R P + T+ G + S P+ FL G
Sbjct: 21 ATRGRIPHAALAISHRGKSCVRARGRRGRIPPAPLTA-GH-ESCLVSAVPLSGTLFLRSG 78
Query: 406 AKIL-IFIVNGGG 441
A+ L + NGGG
Sbjct: 79 ARELPLAASNGGG 91
>02_04_0473 +
23197294-23197340,23197443-23197680,23197792-23198016,
23198616-23198762,23198827-23198961,23199415-23199507,
23199925-23200044,23200303-23200413,23200486-23200611,
23200731-23200829,23201024-23201104
Length = 473
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 376 WGG*ILASLSTFQQMWISKQEYDESGPSI 290
+GG +LAS + F + +K EY+E G SI
Sbjct: 434 FGGSVLASTAEFYEACHTKAEYEEYGASI 462
>12_02_0756 + 22839673-22839870,22839961-22842194,22842280-22842531,
22842612-22842722,22842812-22842893,22843168-22843359
Length = 1022
Score = 27.5 bits (58), Expect = 6.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 413 IFAPPERKYSVWMGWIDPRLPF 348
++ P ++K SV GW+ P +P+
Sbjct: 944 VYIPSQKKLSVRTGWLIPEIPY 965
>01_01_0811 +
6303898-6304141,6304254-6304621,6304692-6304956,
6305040-6305241,6306950-6307140,6308524-6308531,
6308689-6308703
Length = 430
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 153 AGRSGAPGARFARRPGTALAKGFFV 79
A RS GA FA GTAL + FFV
Sbjct: 96 ANRSFEHGANFATAGGTALDRAFFV 120
>09_03_0064 + 11990320-11990431,11991114-11991289
Length = 95
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 354 PFLPSNRCGSRNRSTTSLAPPLYT 283
P +P+ R G R+RS + A PLYT
Sbjct: 28 PCVPAARGGGRSRSGYAAAAPLYT 51
>07_03_0752 -
21241883-21242233,21242336-21242486,21242586-21242823,
21242917-21243127,21243214-21243344,21245046-21245931,
21246087-21246140,21246397-21246461,21246842-21246892,
21246960-21247029,21247493-21247597
Length = 770
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 237 RAAGGSDPRCV*KHFLCTMEGPDS 308
RAAGG RC+ LC E P S
Sbjct: 675 RAAGGEIARCIHVGLLCVQENPAS 698
>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 366 RSSPPFLPSNRCGSRNRSTTSLAPPLYTGSVFKRTGGRCLQQP 238
RSS + G R RS TS+AP + S F +G R Q P
Sbjct: 1056 RSSSRVAAMSNAGRRRRSLTSIAPSPVSSSSFP-SGAREAQAP 1097
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,821
Number of Sequences: 37544
Number of extensions: 412004
Number of successful extensions: 1378
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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