Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2128
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 1e-13
SB_56| Best HMM Match : Actin (HMM E-Value=0) 73 1e-13
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 73 1e-13
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 2e-13
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 2e-13
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 64 8e-11
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 32 0.29
SB_41483| Best HMM Match : Dus (HMM E-Value=1.9) 30 0.89
SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 29 2.7
SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32) 29 2.7
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 28 3.6
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 28 4.7
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 28 4.7
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 28 4.7
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 28 4.7
SB_44313| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29) 27 8.3
SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33) 27 8.3
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 343 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR +K + PP TMKIKI APPERKYSVW+G
Sbjct: 308 PGIADRMQKEITSLAPP-TMKIKIIAPPERKYSVWIG 343
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 342 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR +K S PP TMKIKI APPERKYSVW+G
Sbjct: 307 PGIADRMQKEISALAPP-TMKIKIIAPPERKYSVWIG 342
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 342 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/37 (67%), Positives = 28/37 (75%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR +K + PP TMKIKI APPERKYSVW+G
Sbjct: 307 PGIADRMQKEITSLAPP-TMKIKIIAPPERKYSVWIG 342
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 343 GGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR +K S PP TMKIKI APPERKYSVW+G
Sbjct: 308 PGIADRMQKEISALAPP-TMKIKIIAPPERKYSVWIG 343
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 305 GGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR +K S PP TMKIKI APPERKYSVW+G
Sbjct: 270 PGIADRMQKEISALAPP-TMKIKIIAPPERKYSVWIG 305
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 72.1 bits (169), Expect = 2e-13
Identities = 32/34 (94%), Positives = 33/34 (97%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 316 GGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PG+ DR +K S P TMKIKI APPERKYSVW+G
Sbjct: 281 PGLADRMQKEISALAPS-TMKIKIIAPPERKYSVWIG 316
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 373 GG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF 272
GG ILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 116 GGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = -1
Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
PGI DR +K + +MK+K+ APPERKYSVW+G
Sbjct: 81 PGIADRMQKEIAMLANA-SMKVKVIAPPERKYSVWIG 116
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 376 WGG*ILASLSTFQQMWISKQEYDESGPSIVHRKCF*THRGSL 251
+GG +LAS F + +K +YDE GPSI F HR +
Sbjct: 306 FGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHRDEI 346
>SB_41483| Best HMM Match : Dus (HMM E-Value=1.9)
Length = 169
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 340 GR*KGRRGSIHPIHTEYFLSGGAKILIFIVNGGGNWDFPFF 462
GR K R S P+HTEY + A + I ++ GG+ D F
Sbjct: 37 GREKHER-SRQPVHTEYIQAVAAAVAIPVIANGGSLDIKTF 76
>SB_18397| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1626
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = -3
Query: 408 CSSRKKVLRMDGVDRSSPPFLPSNRCGSRNR---STTSLAPPLYTGSVFKRTG--GRCLQ 244
C+SR D V S PP P+N SR+R + + L+ ++ G R +
Sbjct: 326 CNSRHHTSICDRVQSSLPPSTPANPGNSRDRFYGAVDQVHTTLHATAIANVNGIPARIML 385
Query: 243 QPGAGCSIQACNL 205
GAG S + NL
Sbjct: 386 DSGAGSSYISSNL 398
>SB_35488| Best HMM Match : Peptidase_A17 (HMM E-Value=8.1e-32)
Length = 1019
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = -3
Query: 408 CSSRKKVLRMDGVDRSSPPFLPSNRCGSRNR---STTSLAPPLYTGSVFKRTG--GRCLQ 244
C+SR D V S PP P+N SR+R + + L+ ++ G R +
Sbjct: 13 CNSRHHTSICDRVQSSLPPSTPANPGNSRDRFYGAVDQVHTTLHATAIANVNGIPARIML 72
Query: 243 QPGAGCSIQACNL 205
GAG S + NL
Sbjct: 73 DSGAGSSYISSNL 85
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 345 PSNRCGSRNRSTTSLAPPLYTGSVFK--RTGGRCLQQPGAGC 226
P N+ G++ R +L P++TGS + RT P A C
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 456 RKIPVPP-PIDNED*DLCSSRKKVLRMDGVD 367
++IPV PI+ ED D+ + R +VLR D D
Sbjct: 1465 KRIPVSQLPIETEDEDVAAERDRVLRGDADD 1495
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = -3
Query: 408 CSSRKKVLRMDGVDRS-SPPFLPSNRCGSRNRSTTSLAPPLYT---GSVFKRTGGRCLQQ 241
C S L +D + SPP S+ + ++TT+ A P GS + GG CL+
Sbjct: 1453 CQSPDNKLVLDMYFKGKSPPKPASSSTPTAPKTTTNPATPTAVRPRGSPIRARGGFCLRP 1512
Query: 240 PGAGCS 223
A CS
Sbjct: 1513 ESADCS 1518
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = -3
Query: 363 SSPPFLPSNRCGSRNRSTTSLAPPLYTGSVFKRTGGRCLQQP---GAGCSIQACNLR*FN 193
SS P C R S + P YTGS + RC P GA C +L F+
Sbjct: 684 SSDPCQHGGTCSDRIGSYSCYCRPGYTGSNCQHPLDRCANDPCRNGATCRRTGEDLSDFH 743
Query: 192 C 190
C
Sbjct: 744 C 744
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 452 KSQFPPPLTMKIKIFAPPERKYSVWMGWIDPRLPFYLPTDVDLE 321
+++ PPP+ K I A R+ WI+ + P +L TD L+
Sbjct: 578 RAKSPPPVARKPPIRAKQHRRSKSSDCWIEHKPPCHLDTDTILQ 621
>SB_44313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = -3
Query: 462 KKRKIPVPPPIDNED*DLCSSRKKVLRMDGV--DRSSPPFLPSNRCGSRNRSTTSLAPPL 289
++RK + P ++NE LCSS V D + D + + + T+ P
Sbjct: 5 QRRKELMKPDLNNEYRHLCSSSSTVTITDQLFGDDLAKEVIELTEVNRVGKRVTTTNPTA 64
Query: 288 YTGSVFKRTGGRCLQQPGAGCSIQ 217
Y S T PG GC +Q
Sbjct: 65 YPRSRDNETRELEAMAPGDGCFVQ 88
>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
Length = 1167
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = -3
Query: 480 WNPRPEKKRKIP--VPPPIDNED*DLCSSRKKVLRMDG----VDRSSPPFLPSNRCGSRN 319
W +PE + P VPPP++ E S + ++++ + +PP +P R +
Sbjct: 1096 WETQPESSSRKPEVVPPPVEMESSTTSQSLETPVQVETPNAVAEEQTPPIIPIRR---SS 1152
Query: 318 RSTT 307
R+TT
Sbjct: 1153 RTTT 1156
>SB_11559| Best HMM Match : Peptidase_A17 (HMM E-Value=3.8e-33)
Length = 1485
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = -3
Query: 408 CSSRKKVLRMDGVDRSSPPFLPSNRCGSRNR---STTSLAPPLYTGSVFKRTG--GRCLQ 244
C+SR D V S PP P+N SR R + + L+ ++ G R +
Sbjct: 220 CNSRHHTSICDRVQSSLPPSTPANPGNSRVRFYGAVDQVHTTLHATAIANVNGIPARIML 279
Query: 243 QPGAGCSIQACNL 205
GAG S + NL
Sbjct: 280 DSGAGSSYISSNL 292
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,100
Number of Sequences: 59808
Number of extensions: 399264
Number of successful extensions: 1097
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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