Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2128
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              49   2e-08
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.00 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.0  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   9.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 49.2 bits (112), Expect = 2e-08
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = -1

Query: 482 PGIPDRKKKGKSQFPPPLTMKIKIFAPPERKYSVWMG 372
           PGI DR +K  +   P  TMKIKI APPE+KYSVW+G
Sbjct: 82  PGIADRMQKEITALAPS-TMKIKIIAPPEKKYSVWIG 117



 Score = 35.1 bits (77), Expect = 4e-04
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -2

Query: 373 GG*ILASLSTFQQMWIS 323
           GG ILASLSTFQQMWIS
Sbjct: 117 GGSILASLSTFQQMWIS 133


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 226 ATRPGLLEAATPGAFKNTS 282
           A+ PGLLE A+P AF  TS
Sbjct: 915 ASSPGLLERASP-AFSGTS 932


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 389 YSVWMGWIDPRLP 351
           Y VW+  +DP LP
Sbjct: 589 YGVWINCLDPNLP 601


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = -1

Query: 371 WIDPRLPFYLPTDVD-LETG---VRRVW 300
           W DPRL F   T V+ L  G   ++ +W
Sbjct: 67  WTDPRLAFKKRTGVETLSVGSEFIKNIW 94


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = -1

Query: 371 WIDPRLPFYLPTDVD-LETG---VRRVW 300
           W DPRL F   T V+ L  G   ++ +W
Sbjct: 67  WTDPRLAFKKRTGVETLSVGSEFIKNIW 94


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = -1

Query: 371 WIDPRLPFYLPTDVD-LETG---VRRVW 300
           W DPRL F   T V+ L  G   ++ +W
Sbjct: 6   WTDPRLAFKKRTGVETLSVGSEFIKNIW 33


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -2

Query: 394 ESTPYGWGG*ILASLSTFQQMWISKQE 314
           E TPY W     A  S   + W+   E
Sbjct: 422 ERTPYQWDNSTSAGFSQTNKTWLPVNE 448


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 5/22 (22%), Positives = 12/22 (54%)
 Frame = +2

Query: 221 IEQPAPGCWRQRPPVRLKTLPV 286
           +   A GCW +  P++ + + +
Sbjct: 319 VSDTALGCWNENRPLKRRNIEI 340


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 166 GNSDGRTERGPGGALRPPAR 107
           GN+DG+T      A+ PP+R
Sbjct: 221 GNADGKTLIEALDAILPPSR 240


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 343 FQQMWISKQEYDESGPSIVHRK 278
           F+Q W S Q Y +    +V R+
Sbjct: 151 FRQNWASLQPYKKLSVEVVRRE 172


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 265 AFKNTSCVQWRGQTRRTPVSRSTSV 339
           AFK T C + R   RR+ V+R + +
Sbjct: 338 AFKQTICCKTRIIGRRSWVTRESQI 362


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/41 (24%), Positives = 14/41 (34%)
 Frame = +3

Query: 312 YSCFEIHICWKVEREARIYPPHPYGVLSFWRSKDLNLHCQW 434
           Y C    ICW +   A       + ++ F   K L     W
Sbjct: 486 YPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPW 526


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/41 (24%), Positives = 14/41 (34%)
 Frame = +3

Query: 312 YSCFEIHICWKVEREARIYPPHPYGVLSFWRSKDLNLHCQW 434
           Y C    ICW +   A       + ++ F   K L     W
Sbjct: 539 YPCCWWKICWTITTPAICVGVFTFNIIKFVPVKYLTYEYPW 579


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 145 ERGPGGALRP 116
           +RGPGG L P
Sbjct: 110 QRGPGGRLSP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,277
Number of Sequences: 438
Number of extensions: 4276
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)