Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2126
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.14
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 28 0.76
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 1.8
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 2.3
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 3.1
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 4.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 4.1
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 5.4
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 7.1
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 7.1
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 7.1
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 24 9.4
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 24 9.4
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 30.3 bits (65), Expect = 0.14
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 443 SQMFGVFFWKNVIWTHSCKYFEIHTK 366
SQM FF+KNVIWT +++ + +
Sbjct: 1090 SQMISFFFYKNVIWTFILFWYQFYNE 1115
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 27.9 bits (59), Expect = 0.76
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 352 MALYYLVCISKYLQLCVQITFFQKKTP 432
+ LYYL ++KYL+L + F KK P
Sbjct: 134 VTLYYLNYLTKYLELMDTVFLFLKKKP 160
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 26.6 bits (56), Expect = 1.8
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -3
Query: 443 SQMFGVFFWKNVIWTHSCKYFEIH 372
++M FF+K+V+WT + +++I+
Sbjct: 1067 AEMVNNFFYKSVVWTFTLFWYQIY 1090
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 248 ISSITMSHIIYFSFKLKQTKAKIFV*FTKTSTIIQWHYIIWCVF 379
I+ +T+ ++YFS + I + KT +I + +I C+F
Sbjct: 62 INILTLIIVLYFSLVIVNKTTSIALALFKTLAVISFFLLIGCLF 105
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 421 FGKM*FGRTVVNILKYTPNNIVPLYN 344
+ ++ G +VV YTPNN+ P++N
Sbjct: 782 YARVIVGNSVVARTVYTPNNLNPIWN 807
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.8 bits (54), Expect = 3.1
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 202 FQNADLNKHGTVNSRHILHYNVTYNLLLIQIKANQS 309
F + L HG+++ + I + + Y ++ I K+N S
Sbjct: 20 FHSLSLEAHGSLSDKFISQFRLNYTIIPIAQKSNIS 55
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 222 VKICILEGQINLFVQMDLDFYKRHFTVYTKY-DKNYDLLMIVRFLV 88
+++C+LE +L D++K +T YT + D ++ L I + L+
Sbjct: 517 LRLCLLEFPDSLIRSSFYDYFKAIYTTYTDFEDLDHRLYSIKKCLL 562
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 372 VYFKIFTTVRPNYI-FPKKNTKHLTI 446
VYF + T V PNYI F KH+ +
Sbjct: 261 VYFSVTTPVAPNYIAFAAGPFKHINL 286
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 70 LQNILYN*KSNNH*QIIILIVFGIDCKMSFIKI*IHLYKKVYLSFQNA 213
L+N++YN K +H + + + FG+D +++ L K+Y +A
Sbjct: 659 LENVIYNSKYEDHGKNLPINYFGLD-HFIHLRVWYVLLHKIYFFIASA 705
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 406 FGRTVVNILKYTPNNIVPLY 347
F V++ YTP N VPLY
Sbjct: 460 FHNRKVDVKVYTPRNCVPLY 479
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 153 HFTVYTKYDKNYDLLMIVRFLVIEYI 76
+F + KY+KN I+R VIEY+
Sbjct: 39 YFMMALKYEKNEKSKEIIRSKVIEYL 64
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 445 IVRCLVFFFGKM*FGRTVVNILKYTPNNIVPLYNSR 338
+ RC VFF + +++KY P N +P+ R
Sbjct: 552 VERCYVFFGSNEHLMNWLKDLVKYNPANPIPVPRPR 587
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 328 YKNIDYYTMALYYLVCISKYL 390
Y N Y+ +YL CI+K+L
Sbjct: 179 YLNGRYFRKRAFYLTCIAKHL 199
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 371 CVFQNIYNCASKLHFSKKK 427
C +NIY ++LHFSK +
Sbjct: 474 CTIENIYIENTRLHFSKSQ 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,865
Number of Sequences: 5004
Number of extensions: 38475
Number of successful extensions: 96
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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