Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2126
         (451 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)       28   3.1  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   7.2  
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)          27   7.2  
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)             27   9.5  
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                27   9.5  

>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
          Length = 386

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 405 NYIFPKKNTKHLTIL 449
           N +FPKK+TK+LTIL
Sbjct: 102 NILFPKKDTKYLTIL 116


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 351 CIIVDVFVN*TNILALVCFNLNEK*IICDIVMEDMS*VHGAMFVKICILEGQI 193
           CI + VF     I   +C     K + CD+  E +  V     VK  I  G++
Sbjct: 252 CIEIGVFTGYNTINMAMCLPSGGKVVACDVTDESLKAVDFTSLVKEVIYHGKV 304


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 274 YM*HCNGGYVVSSRCHVC*DLHFGRTNKPFCTNGFRFL*KTF 149
           Y   CN G+V++S    C D++  +++  +C+ G + L  TF
Sbjct: 730 YKCSCNPGFVLASDNFGCLDINECKSSIKYCSQGCKNLYGTF 771


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +1

Query: 286  IQIKANQS*NIRLVYKNIDYYTMAL---YYLVCISKYLQLCV 402
            I+   N+S ++R+  ++ +Y  M L   Y L+C + YL LCV
Sbjct: 886  IKTGVNRS-DLRIFLRSGEYQYMELQTFYELICFAPYLHLCV 926


>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
          Length = 481

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 202 FQNADLNK---HGTVNSRHILHYNVTYNLLLIQIKANQ 306
           F N D+N+     T+NS + +HY +   L+L  +  N+
Sbjct: 365 FSNHDVNRGRVRCTLNSSNYVHYRINNTLILFYVSENK 402


>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
          Length = 567

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 355 ALYYLVCISKYLQLCVQITFFQKKT 429
           AL+Y++C    + +CV + F+  KT
Sbjct: 8   ALFYVICAVSLMIVCVIVVFYDFKT 32


>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 WCVFQNIYNCASKLHFSKKKHQTSDYLN 451
           WC ++N+YN  S L  +   + T+ Y N
Sbjct: 503 WCGWKNVYNDTSGLWVASDYNATASYKN 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,871,320
Number of Sequences: 59808
Number of extensions: 261597
Number of successful extensions: 437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)