Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2126
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical pr...    27   4.8  

>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 376 ISKYLQLCVQITFFQKKTPNI 438
           I ++++ CV+I FF K TPNI
Sbjct: 708 ICRWVRACVKIPFFPKMTPNI 728


>U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical
           protein F58F12.3 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 229 GTVNSRHILHYNVTYNLLLIQIKANQS*NIRLVYKNIDYYTMALYYLVCISKYLQLCVQI 408
           G V    I HY     + +     +QS ++  VY N + + + L+ LV    Y   C + 
Sbjct: 127 GLVAEGRITHYEQNRGVTIKTYAISQSQHVISVYSNENNHQLPLHDLVEYFAYPSQCYEK 186

Query: 409 TFFQK 423
           +F QK
Sbjct: 187 SFAQK 191


>Z81583-1|CAB04671.1|  234|Caenorhabditis elegans Hypothetical
           protein T02G6.1 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 254 SITMSHIIYFSFKLKQTKAKIFV*FTKTSTIIQWHYI 364
           S+  S  IYF F++ + K    +  T+T++  Q+HY+
Sbjct: 53  SVFCSQNIYFYFEILKKKLSSPISATRTASTYQFHYV 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,044,752
Number of Sequences: 27780
Number of extensions: 209740
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)