Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2126
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   0.88 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   0.88 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.7  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.2  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 253 LHYNVTYNLLLIQIKANQS*NIRLVYKNIDYYTMALYY 366
           L++N         I    + +++  Y NIDYY +A  Y
Sbjct: 167 LYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAANY 204


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 253 LHYNVTYNLLLIQIKANQS*NIRLVYKNIDYYTMALYY 366
           L++N         I    + +++  Y NIDYY +A  Y
Sbjct: 167 LYFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAANY 204


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 377 FQNIYNCASKLHFSKKKHQTSDYL 448
           FQ  ++C   + F +K     DY+
Sbjct: 423 FQQFFHCYCPVRFGRKADPNGDYI 446


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 175 HLYKKVYLSFQNADLNKHGTVNSRHILHY 261
           H++    + + NAD N   T+ ++ ILH+
Sbjct: 101 HIWLPDIVLYNNADGNYEVTIMTKAILHH 129


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 74  KIYSITKNLTIIN 112
           K+Y +TKNL I N
Sbjct: 94  KLYGLTKNLEIKN 106


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 228  WHRELTTYP 254
            WH  +TTYP
Sbjct: 1467 WHAVMTTYP 1475


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 419 WKNVIWTHSCKYF 381
           WK V WT    YF
Sbjct: 225 WKGVKWTGKVVYF 237


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 419 WKNVIWTHSCKYF 381
           WK V WT    YF
Sbjct: 278 WKGVKWTGKVVYF 290


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 360 ILFGVYFKIFTTVRPNYIFPKKNTKHL 440
           ++  VY+KIF   R   +  ++   HL
Sbjct: 217 VMIQVYYKIFCAARRIVLEERRAQSHL 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,923
Number of Sequences: 438
Number of extensions: 2784
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)