Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2125
(534 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 28 1.0
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 1.8
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 27 1.8
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 27 2.3
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 26 3.1
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 4.1
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 5.4
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 25 9.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.4
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.4
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.4
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 9.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.4
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 9.4
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.0
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +1
Query: 70 LYNKTNRYFKTRLLTVIEFKMCYLNIIFLTCALLVTSIAQNSSKDAIGFPEMEENPDLRN 249
+Y+ TN +TR + FK C I+F+ + + ++AI E N DL
Sbjct: 140 IYDATNGTRRTRRILYDRFKNCGFKILFIESLCNKEDVINANIQEAIHVSEEFRNWDLEM 199
Query: 250 KE 255
E
Sbjct: 200 AE 201
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 344 QSQIQSSFWSPG*NNSLSGHLAGMNTGWRFSLFLKSGFSSISGNPI 207
Q + + S WS + GH +NT F L L F+ + N I
Sbjct: 451 QEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFLTLYQSFTEVDENSI 496
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -2
Query: 317 SPG*NNSLSGHLAGMNTGWRFSL-FLKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 141
SP NS+ G N W L +L + +SG+ +A+F L I T AHV I+F
Sbjct: 416 SPIVGNSMVTVANGHN--WMCILNYLTDSYPLLSGSAVAAFTLPSFIGATVFAHVSQIMF 473
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 254 SLFLKSGFSSISGNPIASFELFCAID 177
+ F++SG S++ GN + ++EL ID
Sbjct: 128 NFFVESGESTLEGNNVINYELAAGID 153
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 349 PSEPISPMNRQMLASFSTRTM*SRTVSISSTKFSNSGL 462
P EPI P+N M+ S++ R ++ T F ++ L
Sbjct: 788 PYEPIIPLNDDMVLSYNKRVYGVSQITSGITNFESTTL 825
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 354 GWSAITNPVVFLVSRIEQFVVRTSCRNEHWLAILFISQI 238
GW AI ++FLV+ + F V+ E W AI+ + I
Sbjct: 158 GWIAI---LLFLVAVLNSFFVKWFGETEFWFAIIKVIAI 193
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 512 IPIPLKLMYPCCKGFARKPELLNFVEEIDTVRLHMVLVEKLASICLFMG 366
+ +PL L YP + P L +E D LH ++++L S+C +G
Sbjct: 205 LALPLSL-YPLTV-LTQNPNLPKLLERPDINDLHQGILQELDSLCNCLG 251
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +2
Query: 23 DFYFLTVTIV--IVEHFCYITK 82
D YF+ + I+ I++H C ITK
Sbjct: 503 DNYFINIFIIFLIIKHMCLITK 524
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 321 LVSRI-EQFVVRTSCRNEHWLAIL-FISQIGIFFHFRES 211
++SR+ E+F +R E WLA++ + + I FF ++
Sbjct: 928 IMSRMQEKFYIRFDSNYEQWLALIKYTASIDCFFSLSQA 966
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +1
Query: 118 IEFKMCYLNIIFLTCALLVTSIAQNSSKD 204
+ F +CY IF+ A+ ++ +N +D
Sbjct: 439 VSFVVCYCVAIFIIIAIYAVNVRENRRRD 467
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +2
Query: 23 DFYFLTVTIVIVEHFCYITKRI 88
D YF + +++ +CY+T +I
Sbjct: 404 DIYFTLIVLIMTLCYCYVTVKI 425
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 224 ISGNPIASFELFCAIDVTNNAHV 156
I G PI +F F +D+ N H+
Sbjct: 124 IDGRPITNFASFNFLDLAENKHI 146
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -3
Query: 241 NRDFLPFPGIR*HLLSCFVLLMLLTMHMLEI 149
+RD L + + H++ C + L+L T +E+
Sbjct: 543 SRDLLAYAILFIHIMVCILFLLLSTQRFMEV 573
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 290 RTTNCSIRETKKTTGFVIADHPNLYH 367
+ + CS+ E + ++A+HP+L H
Sbjct: 174 KNSECSLSELQTIVTSLLAEHPSLAH 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,621
Number of Sequences: 5004
Number of extensions: 54347
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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