Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2125
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0299 - 2322204-2322734,2324089-2326164                           31   0.44 
01_05_0079 - 17944260-17944462,17944742-17945073,17945663-179456...    28   4.1  
01_06_1665 - 38988014-38988078,38988459-38988546,38988921-389890...    28   5.4  
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606...    27   7.2  
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476...    27   7.2  

>05_01_0299 - 2322204-2322734,2324089-2326164
          Length = 868

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
 Frame = +1

Query: 193 SSKDAIGFPEMEENPDLRNKENRQPVFIPARCPDNELFYPGDQ--KDDW-ICDCRPSEPI 363
           SSK ++      E P+L+ KEN  PV  P    +        Q  KDD  I   R S   
Sbjct: 307 SSKPSVSGKAQSEIPNLKPKENSNPV--PDHSEEQPFVAAATQPVKDDKPIPSKRGSSKR 364

Query: 364 SPMNRQMLASF--STRTM*SRTVSISSTKFSNSG 459
             ++RQ L SF  S+R + S+  S+ S+K S+ G
Sbjct: 365 DSLHRQKLMSFDKSSRALGSKG-SLRSSKHSSLG 397


>01_05_0079 -
           17944260-17944462,17944742-17945073,17945663-17945691,
           17946135-17946208,17946293-17946449,17946653-17946655
          Length = 265

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 507 HSIEVNVSVLQGFCSQTGITEFCGRNRYCPTSHGPCRKAGQ 385
           HS+ +N+S L G     G+TE  G    C T  G   KAG+
Sbjct: 215 HSMVLNISKLTG--EDAGVTEAYGAIADCYTELGELEKAGK 253


>01_06_1665 -
           38988014-38988078,38988459-38988546,38988921-38989082,
           38989268-38989359,38989896-38990007,38990040-38990181,
           38990448-38990668
          Length = 293

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 138 FEYYISNMCIVSNINSTKQLKRCYRIPGNGRK 233
           ++Y+ + + + S  N TK LK+ +  P  GRK
Sbjct: 173 YDYFSTALYLYSKYNVTKALKKAHIYPRGGRK 204


>10_08_1002 +
           22160109-22160264,22160374-22160484,22160612-22160689,
           22160774-22160921,22161007-22161077,22161430-22161526,
           22161603-22161790,22161960-22162223
          Length = 370

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 314 ETKKTTGFVIADHPNLY 364
           ETK  +G+ +A HPN+Y
Sbjct: 180 ETKDISGYKVASHPNIY 196


>01_01_0633 -
           4767914-4768020,4768057-4768085,4768590-4768745,
           4768835-4768983,4769106-4769638,4769900-4770068,
           4770255-4770347,4770641-4770698,4771392-4771471,
           4771548-4771715,4772090-4772242,4772756-4772884,
           4772996-4773085,4773990-4774129,4774683-4774814,
           4774916-4775087
          Length = 785

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 138 FEYYISNMCIVSNINSTKQLKRCY 209
           F+Y+IS +  ++ +N   Q+KRCY
Sbjct: 545 FDYHISLIPSLNRVNLVYQIKRCY 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,572
Number of Sequences: 37544
Number of extensions: 316557
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)