Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2125
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)                    28   5.5  
SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)                 27   7.3  
SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)           27   7.3  
SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0)                    27   9.6  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_46588| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)
          Length = 563

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 343 CRPSEPI-SPMNRQMLASFSTRTM*SRTVSISSTKFSNSGLRAK 471
           C  + P+ +P    +LASF+T    S +  I+ST F N G R+K
Sbjct: 422 CGNARPLRTPTRSSLLASFTTMPHSSASFHITSTPFPN-GYRSK 464


>SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)
          Length = 340

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 67  LLYNKTNRYFKTRLLTVIE--FKMCYLNIIFLTCALLVTS 180
           L+  K  R F TR  T ++  FK+CYL ++F+   L + S
Sbjct: 226 LVIRKRERNF-TRTFTALQVVFKVCYLPMVFVWTLLFICS 264


>SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1179

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -2

Query: 458  PELLNFVEEIDTVRLHMVLVEKLASICLFMGDIGSDGLQSQIQSSFWSPG*NNSLSGHLA 279
            P  +N  ++  +  LH+   +    +C F+   G+D   S   SS W+P  + + +GH+ 
Sbjct: 838  PADINVADDSGSTPLHLAAAKGHRKLCKFLVGAGAD--VSTKDSSRWTPLHHAAGAGHVR 895

Query: 278  GMNT 267
             + T
Sbjct: 896  TVET 899


>SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)
          Length = 655

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 PSEPISPMNRQMLASFSTRT 408
           P   +SP+NR +L S STRT
Sbjct: 468 PHPHVSPLNRNLLRSISTRT 487


>SB_35707| Best HMM Match : TGF_beta (HMM E-Value=0)
          Length = 295

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 287 HLAGMNTGWRFSLFLKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIFK*HILNSITVN 108
           H++     W+  +    G+S+   +   SF L   ++ TN+A V+ ++   H++N  TV 
Sbjct: 200 HVSFRKLRWQDWVIAPEGYSAFYCSGECSFPLNANMNATNHAIVQTLV---HLMNPKTVP 256

Query: 107 K 105
           K
Sbjct: 257 K 257


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 368  P*TDKCWPAFLQGPCEVGQYLFLPQNSVIPVCEQNPCNTDTL 493
            P  D  WP    GPC++G Y   P+ +  P+    PC  +T+
Sbjct: 2827 PNPDGYWPPVEAGPCKMGHY--CPKGTQAPL----PCPDNTM 2862


>SB_46588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 106 LLTVIEFKMCYLNIIFLTCALLVTSIAQNSSKDAIGFPEMEENPDLR 246
           L  V+   +C +  I L           +SS+D + FP M+ N   R
Sbjct: 87  LSAVVMLFLCIITYILLPSLNFARHFMGHSSRDQVDFPHMQHNQGSR 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,946,172
Number of Sequences: 59808
Number of extensions: 400049
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)