Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2125
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    29   2.8  
L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical pr...    27   8.5  
L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF016423-5|AAB65320.1|  230|Caenorhabditis elegans Hypothetical
           protein F40A3.2 protein.
          Length = 230

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 506 IPLKLMYPCCKGFARKPELLNFVEEIDTV 420
           IPL L+Y CC+ FA+K +L    + ++ V
Sbjct: 132 IPLALIYMCCEHFAKKRQLRRVEQHLNGV 160


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 245 LKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 141
           +  G+  +S N   + ++FC+I  +  +H+ NI+F
Sbjct: 37  ISHGYFDVSKNTQITSDIFCSISFSFTSHLSNILF 71


>L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical
           protein C02D5.2b protein.
          Length = 263

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
 Frame = +1

Query: 127 KMCYLNIIFLTCALLVTSI-AQNSSKDAIG----FPEMEEN--PDLRNK-EN--RQPVFI 276
           K  Y  I  L+  LL  S+ + ++SK  IG    F E E    P ++   EN  +  V++
Sbjct: 26  KYIYGTIFILSIFLLYRSLNSPDTSKHGIGRNGDFIEYEPKAGPTIKEPVENIVKLDVYM 85

Query: 277 PARCPDNELFYPGDQKDDW 333
            A+CPD   F+    K  W
Sbjct: 86  EAQCPDTSRFFRQQLKKAW 104


>L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical
           protein C02D5.2a protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
 Frame = +1

Query: 127 KMCYLNIIFLTCALLVTSI-AQNSSKDAIG----FPEMEEN--PDLRNK-EN--RQPVFI 276
           K  Y  I  L+  LL  S+ + ++SK  IG    F E E    P ++   EN  +  V++
Sbjct: 86  KYIYGTIFILSIFLLYRSLNSPDTSKHGIGRNGDFIEYEPKAGPTIKEPVENIVKLDVYM 145

Query: 277 PARCPDNELFYPGDQKDDW 333
            A+CPD   F+    K  W
Sbjct: 146 EAQCPDTSRFFRQQLKKAW 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,667,933
Number of Sequences: 27780
Number of extensions: 311056
Number of successful extensions: 969
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)