Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2123
         (456 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O18023 Cluster: Ig-like and fibronectin type-III domain...    31   8.9  
UniRef50_P38083 Cluster: Uncharacterized protein YBR063C; n=2; S...    31   8.9  

>UniRef50_O18023 Cluster: Ig-like and fibronectin type-III
           domain-containing protein C25G4.10 precursor; n=3;
           Caenorhabditis|Rep: Ig-like and fibronectin type-III
           domain-containing protein C25G4.10 precursor -
           Caenorhabditis elegans
          Length = 1208

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 178 LSDKNSRQAFVIGLTSRS*DY*TNS*LAIEILNPLGHNLKFSAEL--SMKCCQCQNLTYF 351
           LSD  S   +++ +T+R+ +Y T+      I +   H +K +A L  SMKCC   N+T F
Sbjct: 117 LSDLRSSTRYIVYVTARN-EYGTSVPSVRNIASTNVHMVKNNASLPDSMKCCTDANVTSF 175

Query: 352 NSA 360
            S+
Sbjct: 176 CSS 178


>UniRef50_P38083 Cluster: Uncharacterized protein YBR063C; n=2;
           Saccharomyces cerevisiae|Rep: Uncharacterized protein
           YBR063C - Saccharomyces cerevisiae (Baker's yeast)
          Length = 404

 Score = 31.5 bits (68), Expect = 8.9
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 227 REVRPITNACLEFLSDNYNVLFMIMYFEKVVFFGSDNSLVLSGA 96
           RE+R I  + L   S   + LF+ M+ EK VFF ++  + ++GA
Sbjct: 290 REIRDICKSFLIIKSQFGDELFLTMFMEKPVFFDNNIPIEITGA 333


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,684,634
Number of Sequences: 1657284
Number of extensions: 6506390
Number of successful extensions: 13316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13315
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23931581955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)