Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2123
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 0.78
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 0.78
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 0.78
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 0.78
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 0.78
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 0.78
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 0.78
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 0.78
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 0.78
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 0.78
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 0.78
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 1.8
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 25 5.5
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 7.3
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 24 9.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.78
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = -2
Query: 359 ALLKYVKF*HWQHFMDSSAENFKL 288
A++K +K HW+H+++S+ E FK+
Sbjct: 758 AIIKSLK--HWRHYLESTIEPFKI 779
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 345 VFQQCTLNPQSQNKTKFFLNMIFANLI 425
+F+QCT +++ T F+L ++F L+
Sbjct: 1103 LFEQCTKEVSAEDVTNFWLELVFTLLL 1129
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 25.0 bits (52), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 363 LNPQSQNKTKFFLNMIFANLIYKNCTCP 446
++P+S+ + K F +IF L Y T P
Sbjct: 824 MSPKSEVRIKVFTTLIFGQLDYGKLTLP 851
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 354 QCTLNPQSQNKTKFFLNMIFANLIYKNC 437
Q +L+ S N F+L M+ +L +NC
Sbjct: 188 QTSLHHSSDNSLVFYLEMLLDSLDLRNC 215
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 319 SWTVQPRISSYVPKDLEFLSLANYLF---NNLNYG 224
SW RI ++PKD ++L + ++F N+N G
Sbjct: 51 SWECGDRIRGFLPKDKQYL-VTRHVFCVQRNINIG 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,786
Number of Sequences: 5004
Number of extensions: 30873
Number of successful extensions: 84
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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