Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2123
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0212 - 2654691-2656976                                           32   0.25 
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364...    31   0.58 
12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    27   7.2  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    27   7.2  

>04_01_0212 - 2654691-2656976
          Length = 761

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 330 VSKFNVFQQCTLNPQSQNKTKFFLNMIFANLIYK 431
           + ++N+  +CT N Q Q KT F L  IF +++ K
Sbjct: 373 MGQYNILHECTSNDQDQTKT-FLLTRIFISILVK 405


>04_04_1004 +
           30035704-30035934,30036030-30036287,30036382-30036479,
           30036574-30037137,30037232-30037484,30037576-30037758,
           30037839-30038465
          Length = 737

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 300 LG*TVHEMLPVSKFNVF-QQCTLNPQSQNKTKFFLNMIFAN 419
           +G  +  +LP  KF VF ++C+LNP   N  +  L  IFAN
Sbjct: 83  IGHFLARVLPKRKFTVFGRECSLNPGPFNVKEHVLISIFAN 123


>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 425 YEVSKNHVQKKFSLILTLWIECALLKYVKF*HWQHFMDSSAENFKLCPKGFRISIAS*LF 246
           Y+  K H+ K+F  +  +        Y+    +  +MD   E+F +CPK F  S+ S L+
Sbjct: 47  YDRLKLHLAKEFCEMPHMPYPEDTPTYIPKIQFLRYMDDYVEHFNICPK-FNSSVESCLY 105


>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
            2907650-2907790,2907870-2908043,2908577-2908851,
            2909592-2909755,2910409-2910536,2910628-2910734,
            2911747-2911880,2912266-2912441,2912530-2914257,
            2915084-2915239,2915328-2915486,2915581-2915751,
            2915931-2916047,2916417-2916473,2916565-2916680,
            2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 318  EMLPVSKFNVFQQCTLNPQSQNKTKFFLNMIFANLIYKNCTC 443
            E + +S  ++ Q+C        K K  L+ +F N+ +  C C
Sbjct: 1048 ERINISTEDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDC 1089


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,674,295
Number of Sequences: 37544
Number of extensions: 154472
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)