Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2123
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p...    31   0.30 
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p...    31   0.30 
Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z54216-2|CAA90945.1|  242|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 178 LSDKNSRQAFVIGLTSRS*DY*TNS*LAIEILNPLGHNLKFSAEL--SMKCCQCQNLTYF 351
           LSD  S   +++ +T+R+ +Y T+      I +   H +K +A L  SMKCC   N+T F
Sbjct: 117 LSDLRSSTRYIVYVTARN-EYGTSVPSVRNIASTNVHMVKNNASLPDSMKCCTDANVTSF 175

Query: 352 NSA 360
            S+
Sbjct: 176 CSS 178


>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
           protein C25G4.10 protein.
          Length = 1208

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 178 LSDKNSRQAFVIGLTSRS*DY*TNS*LAIEILNPLGHNLKFSAEL--SMKCCQCQNLTYF 351
           LSD  S   +++ +T+R+ +Y T+      I +   H +K +A L  SMKCC   N+T F
Sbjct: 117 LSDLRSSTRYIVYVTARN-EYGTSVPSVRNIASTNVHMVKNNASLPDSMKCCTDANVTSF 175

Query: 352 NSA 360
            S+
Sbjct: 176 CSS 178


>Z81517-2|CAB04209.1|  973|Caenorhabditis elegans Hypothetical
           protein F28B1.2 protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 262 IEILNPLGHNLKFSAELSMKCCQCQNLTYFN 354
           I+++NP G  +K+S  + M+ C+C N+  FN
Sbjct: 294 IQLINPAGACVKYSEPVEMQKCKC-NVKLFN 323


>Z54216-2|CAA90945.1|  242|Caenorhabditis elegans Hypothetical
           protein T24H10.3 protein.
          Length = 242

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 100 PDKTKLLSEPKKTTFSKYIIINKTL-*LSDKNSRQAF 207
           PDK+ L+ E  +T  +K+ ++NK    LSD+  R+ +
Sbjct: 43  PDKSNLVEEDMQTYTTKFQLLNKAYQILSDEEKRKIY 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,110
Number of Sequences: 27780
Number of extensions: 171963
Number of successful extensions: 331
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)