Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2121
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 252 2e-68
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 250 1e-67
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 109 2e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 73 3e-14
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.20
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.36
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.47
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.62
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.83
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 2.5
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.3
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 3.3
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 4.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 4.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 5.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.8
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 7.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 252 bits (618), Expect = 2e-68
Identities = 111/151 (73%), Positives = 132/151 (87%)
Frame = +1
Query: 13 AAITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 192
++ITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN C
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 193 FEPANQMVKCDPRHGKYMACCMLYRGDVIPKDVNAAIATIKTKRTIQFVNWCPTGFKVSI 372
FEP NQMVKCDPR G+YMA C+LYRGDVIP+DV AA+ +IK++RTIQFV+WCPTGFK+ I
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGI 359
Query: 373 NYQPPTVVPGGNLAKVQRAVCMLSNTTTISK 465
Y+PP VPG +AKV RAVCMLSNTT+I++
Sbjct: 360 CYEPPQHVPGSGIAKVNRAVCMLSNTTSIAE 390
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 250 bits (611), Expect = 1e-67
Identities = 111/151 (73%), Positives = 130/151 (86%)
Frame = +1
Query: 13 AAITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 192
++ITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN C
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 193 FEPANQMVKCDPRHGKYMACCMLYRGDVIPKDVNAAIATIKTKRTIQFVNWCPTGFKVSI 372
FEP NQMVKCDPR G+YMA C+LYRGDVIP+DV AA+ TIK KRTIQFV+WCPTGFK+ I
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGI 355
Query: 373 NYQPPTVVPGGNLAKVQRAVCMLSNTTTISK 465
+PP + G +AKV RAVCMLSNTT+I++
Sbjct: 356 CDRPPQHIEGSEIAKVDRAVCMLSNTTSIAE 386
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 109 bits (263), Expect = 2e-25
Identities = 49/125 (39%), Positives = 74/125 (59%)
Frame = +1
Query: 13 AAITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNAC 192
A +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 193 FEPANQMVKCDPRHGKYMACCMLYRGDVIPKDVNAAIATIKTKRTIQFVNWCPTGFKVSI 372
F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV W P ++
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAV 353
Query: 373 NYQPP 387
PP
Sbjct: 354 CSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 72.5 bits (170), Expect = 3e-14
Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Frame = +1
Query: 13 AAITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEIT 183
+A T +LR+ G +N DL +L+P PR HF L +Y P + E + +V ++
Sbjct: 237 SASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVM 296
Query: 184 NACFEPANQMVKCDP-RHGKYMACCMLYRGDVIPKDVNAAIATIKTKRTIQFVNWCPTGF 360
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P
Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASI 356
Query: 361 KVSINYQPPTVVPGGNLAKVQRAVCMLSNTTTISKL 468
+V+++ + P + ++ + ML+N T+I+ L
Sbjct: 357 QVALSKKSPYIKTNHRVSGL-----MLANHTSIASL 387
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.12
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = +2
Query: 134 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 313
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 314 KPSVLSNSSTGVQPVSRSVSTTNHPPWCP 400
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.0 bits (52), Expect = 5.8
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = +2
Query: 134 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 313
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 314 KPSVLSNSSTGVQPVSRSVSTTNHPPWCPE 403
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +2
Query: 266 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTNHPPWCP 400
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.20
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +2
Query: 62 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 241
+P+ T TP++T++ T +S+P T + +P + T+ ++ + +TPV ++
Sbjct: 410 TPTVPPTSSSTPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTST 466
Query: 242 TWLAVCCTVVTSYPRM*TRPSLPSKPSVLSN--SSTGVQPVSRSVSTTNH 385
CT TS P T + S P +N +ST V S V+++N+
Sbjct: 467 PLTTTNCTTSTSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY 514
Score = 29.1 bits (62), Expect = 0.36
Identities = 28/105 (26%), Positives = 50/105 (47%)
Frame = +2
Query: 68 SSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTW 247
S+ + + TPV++S++ T SS P T P + T+ ++ + +TPV ++
Sbjct: 499 STSVPYTSTPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPL 550
Query: 248 LAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTN 382
CT TS P T P S ++ S++ PV+ + TT+
Sbjct: 551 ATTNCTTSTSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 25.4 bits (53), Expect = 4.4
Identities = 29/97 (29%), Positives = 50/97 (51%)
Frame = +2
Query: 92 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 271
TP++T++ T +S+P T + +P + T+ ++ + +TPV +S + T V
Sbjct: 466 TPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV 522
Query: 272 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTN 382
TS P T + + SVL +ST V S ++TTN
Sbjct: 523 TSTPV--TTTNCTTSTSVL-YTSTPV--TSTPLATTN 554
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.36
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +2
Query: 101 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 280
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 281 PRM*TRPSLPSKPSVLSNSST 343
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 0.47
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = -3
Query: 306 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 127
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 126 RVRDQWEVDTGVR 88
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.62
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 178 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVIPKDVNAAI 303
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.83
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 65 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 211
P+++ P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 128 QSSLPRRPTMNSFPSPRSQTHASSPPTR 211
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.8 bits (54), Expect = 3.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 62 SPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSP 202
SPS LT L S++ S + + + R+ T +S SP+ Q+ S+P
Sbjct: 619 SPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTP 664
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 3.3
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +2
Query: 89 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 241
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 4.4
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +2
Query: 221 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTNHPPWCP 400
+TP ++S A VV+S T + S S ++SS P S SVS W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 4.4
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +2
Query: 95 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 274
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 275 SYPRM*TRPSLPSKPSVLSNSSTG 346
+ P + P S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 299 PSLPSKPSVLSNSST--GVQPVSRSVSTTNHPPW 394
P PS+P+++SN ST G+Q V V W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +2
Query: 302 SLPSKPSV---LSNSSTGVQPVSRSVSTTNHP 388
+LP KPS+ +++S V+P S STT++P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 46 ALNVDLTEFQTNLVPYPRIHFPLVT 120
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,106
Number of Sequences: 5004
Number of extensions: 44188
Number of successful extensions: 187
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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