Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2121
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.9  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.7  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   8.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 312 QNQAYYPIRQLVSNRFQGQYQ 374
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 363  GQYQLPTTHRGARRQLGQSS 422
            GQY  P  H G+R  +G+ S
Sbjct: 1825 GQYGAPYDHYGSRGSVGRRS 1844


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -1

Query: 359 KPVGHQLTNWIVRLVLMVAMAAFTSLGMT-----SPRYSIQQAM 243
           +P+   L  W++ L+  +  A +T + +      S  YS   AM
Sbjct: 157 RPIRFILAAWLIALISAIPFAIYTKVNLVEYPPESGNYSADSAM 200


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 345 VSNRFQGQYQLPTTHRGARRQ 407
           V  RF+GQY +P    G+ ++
Sbjct: 44  VRRRFKGQYLMPNIGYGSNKK 64


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 256 MLYRGDVIPKDVNAAIAT 309
           M+Y G  +  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/56 (21%), Positives = 24/56 (42%)
 Frame = -3

Query: 417 FGQVASGHHGGWLVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGYDVTTVQHTA 250
           FG+  S      ++  T+  T     ++L   LG       + +  YD++ ++H A
Sbjct: 460 FGRALSRRIKATVLFATETGTSQMYAEKLSELLGHAFHSQVLSMSDYDISNIEHEA 515


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 351 NRFQGQYQLP 380
           NRF G+Y++P
Sbjct: 435 NRFSGEYEIP 444


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 59  TSPSSRLTWCLTPVSTS 109
           TSP+S +  C++P++ S
Sbjct: 582 TSPNSAVRKCMSPINGS 598


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -2

Query: 268 HGTAYSKPCTCHDGGRISPSGW 203
           H   ++ PC CH  G+     W
Sbjct: 35  HIRTHTLPCKCHLCGKAFSRPW 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,224
Number of Sequences: 438
Number of extensions: 3381
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)