Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2120
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    31   0.15 
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   1.8  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    27   2.4  
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.4  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   4.1  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.5  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.2  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   7.2  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +2

Query: 230 SWAAAIDLLTNDECRLL--LKVEDFFNDDCDLLKNFPSAATNIEI-NNTTSFYPPSPPEL 400
           SW A + +   DE RL+  L  +D F  + +  +N  +A T   +  + TSFYP S P L
Sbjct: 622 SWEAVVIIPFIDETRLIDALASKDKFLTEEERKRNSFNAPTVFSLAEDYTSFYPSSLPSL 681

Query: 401 KPN 409
            P+
Sbjct: 682 FPD 684


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 439 TTKQSMQTREYFFQLVTAKSLTFLWIF 519
           T ++++   ++FF +  AK++ +LW+F
Sbjct: 481 TARRAINVLKFFFIIPIAKNVCYLWVF 507


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 242 AIDLLTNDECRLLLKVEDFFN 304
           +I+ +TND+ R++ ++E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 427 LSSATTKQSMQTREYFFQLVTAKSLTFLWIF 519
           +S A  KQS+Q   Y   L+T +  TFL  F
Sbjct: 15  ISLAVPKQSLQECSYMSNLITDRESTFLSYF 45


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +1

Query: 4   FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 177
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 178 FAFVELNHYNNE 213
           F F E NH +++
Sbjct: 367 FQFQEQNHIHHK 378


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 115 DKLVHLHKTPTSLDINPSGLLFAFVELNH 201
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 260 NDECRLLLKVEDFFNDDC 313
           NDECR L +   FF+ +C
Sbjct: 535 NDECRRLKQCNHFFHREC 552


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 91  LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECES 222
           L +    ++KLV+L      T T LD +   ++ A V+ N Y N C++
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQN 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,244
Number of Sequences: 5004
Number of extensions: 44457
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)