Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2120
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    34   0.084
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194...    28   4.2  

>09_06_0328 + 22365308-22365415,22365743-22366018,22366166-22366417,
            22366542-22366939,22367028-22368021,22368199-22368409,
            22368515-22368749,22368874-22368996,22369190-22369310,
            22369416-22369625
          Length = 975

 Score = 33.9 bits (74), Expect = 0.084
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 284  KVEDFFNDDCDLLKNFPSAATNIEINNTTSFYPPSPP 394
            KV+   N+  DLL  + +A TN+E  + T   PP PP
Sbjct: 927  KVQRLLNEFMDLLSEYEAAETNVEQMDVTPTPPPPPP 963


>02_05_0007 +
           24918163-24918420,24919360-24919410,24919411-24919480,
           24919645-24919830,24920127-24920275,24921310-24921417,
           24921501-24921638,24922574-24922853,24922924-24923047,
           24923197-24923312,24923612-24923619
          Length = 495

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 524 FWKIQRKVKLFAVTS*KKYSLVCIDCLVV 438
           FW +  K+K+F +TS KK + +  D +VV
Sbjct: 109 FWGVYTKLKIFNMTSYKKVAYLDADTIVV 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,928
Number of Sequences: 37544
Number of extensions: 287678
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)