Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2120
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   5.7  
SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)            27   7.5  
SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)            27   7.5  
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_40103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 99  NGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQ 206
           +G  TG  +PS  +TNIIRH     +  +  T  ++
Sbjct: 57  SGITTGTATPSVNSTNIIRHYYWHRYAHVNSTNIIR 92


>SB_42680| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 700

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 117 QVSPSSQNTNIIRHQSLWT 173
           QVS SS  TN +RH+S+W+
Sbjct: 458 QVSKSSNFTNSLRHKSVWS 476


>SB_42908| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=3.5)
          Length = 218

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  NGALTGQVSPSSQNTNIIRH 158
           +G  TG  +PS  +TNIIRH
Sbjct: 57  SGITTGTATPSVNSTNIIRH 76


>SB_21194| Best HMM Match : FA_hydroxylase (HMM E-Value=1.8)
          Length = 252

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  NGALTGQVSPSSQNTNIIRH 158
           +G  TG  +PS  +TNIIRH
Sbjct: 22  SGITTGTATPSVNSTNIIRH 41



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 99  NGALTGQVSPSSQNTNIIRH 158
           +G  TG  +PS  +TNIIRH
Sbjct: 74  SGITTGTATPSVNSTNIIRH 93


>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 353 EINNTTSFYPPSPPELKPNP 412
           EI +  +F+PP PP + P P
Sbjct: 875 EITHFATFFPPPPPNVPPPP 894


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,984,861
Number of Sequences: 59808
Number of extensions: 334991
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)