Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2120
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    31   0.54 
Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   6.6  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   6.6  

>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
 Frame = +3

Query: 63  VCLHAQYKNACQNGALTGQVSPSSQNTNIIRHQ----SLWTFIRIRGTK-----SLQQ*V 215
           +CLH  +K  C N    G   PS+ N   +R       L  FI I         ++ Q  
Sbjct: 69  ICLHKNFKKECFNFKGEGTAIPSTFNEETVRPWVELFHLEIFICILNFTLWIYLAIDQWK 128

Query: 216 RVXRSHGLRPSICSLTMSAVCCSKLRISSMMIVICLK-TFRALQRISKSITLQVSTH 383
           R+ +   ++ SI  L++S  C   +RI    + IC+   + +   + KSI LQ+S +
Sbjct: 129 RIEKD--VKTSISMLSLS--CSIGVRILFSTVAICISLVYGSKPSLIKSIVLQLSLY 181


>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 136 KTPTSLDINPSGLLFAFVELNHYNNEC 216
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 LRPSICSLTMSAVCCSKLRISSMMIVICLKTFRALQRISKS 359
           ++PS C + M    CSK+R S +   + + T  A   I +S
Sbjct: 82  IKPSPCDMLMRTEFCSKIRASFLFAFLLVSTSHAGILIERS 122


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 348  ISKSITLQVSTHHHRQN*NQIPPNS 422
            + +++++Q+ T HH Q   Q PP S
Sbjct: 2344 MQRAVSMQMPTSHHHQGQQQAPPQS 2368


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 348  ISKSITLQVSTHHHRQN*NQIPPNS 422
            + +++++Q+ T HH Q   Q PP S
Sbjct: 2344 MQRAVSMQMPTSHHHQGQQQAPPQS 2368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,749,506
Number of Sequences: 27780
Number of extensions: 261244
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)