Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2120
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.22 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.22 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.29 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   4.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +2

Query: 272 RLLLKVEDFFN-DDC----DLLKNFPSAATNIEINNTTSF 376
           R LL +E  +  D C    D LK   SAA N+E++N++ F
Sbjct: 437 RCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPF 476


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +2

Query: 272 RLLLKVEDFFN-DDC----DLLKNFPSAATNIEINNTTSF 376
           R LL +E  +  D C    D LK   SAA N+E++N++ F
Sbjct: 475 RCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPF 514


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
 Frame = +2

Query: 215 ASXKESWAAAIDLLTNDECRLLLKVEDFFNDDCDLLKN--FPSAATNIEINNTTSFYPPS 388
           +S   S   A+     DE RLL  V     D CD  ++   P      E  N T+  P  
Sbjct: 158 SSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTL 217

Query: 389 PPELKPNP 412
              L PNP
Sbjct: 218 ACPLNPNP 225


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 382 WVETCSVIDFDIRCSARKVFKQITIIIEEILNFEQQTALIVSEQID 245
           W++     +F   CS   V   IT + + +  F ++ AL +SE ++
Sbjct: 122 WLQMTKHHNFIKVCSVNDVNMTITELTDPVKEFWERRALQISEGVE 167


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 308 DCDLLKNFPSAATNIEINNTTSFYPPS 388
           DC LLK   +  T   +N TT F PP+
Sbjct: 290 DC-LLKKERNGPTQTTLNATTLFCPPN 315


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 308 DCDLLKNFPSAATNIEINNTTSFYPPS 388
           DC LLK   +  T   +N TT F PP+
Sbjct: 380 DC-LLKKERNGPTQTTLNATTLFCPPN 405


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 66  CLHAQYKNACQNGALTGQVSPSSQNTNIIRHQSLW---TFIRIRGTKSLQQ 209
           C++ Q  N C  G L G + P    +      S +   TF+R  G  S+ Q
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQ 235


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 453 NANKRIFFSTGYSKKFNLPLDLPKHFLNF 539
           N NK+++++    ++  +P+ +P H  NF
Sbjct: 327 NYNKKLYYNIINIEQIPVPVPVPIHCGNF 355


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 457 QTREYFFQLVTAKSLTFL 510
           Q REY+   V  KSL++L
Sbjct: 458 QKREYYSHYVAFKSLSYL 475


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 45  NRLHTSVCLHAQYKNACQNGALTGQVSPS 131
           N L  ++ +  Q       GA TG++SP+
Sbjct: 52  NILPNNISIAGQNTYKVAKGAFTGEISPA 80


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 403 TKSHPTH*LSSATTKQSMQTREYFFQLVTA 492
           T S P H  SSA+T  + +T    +  V+A
Sbjct: 65  TGSSPQHSGSSASTSPAARTTSSMYPYVSA 94


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 74 VKAHAGVQTIRY 39
          VKA +GVQT+R+
Sbjct: 59 VKAISGVQTVRF 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,176
Number of Sequences: 438
Number of extensions: 2860
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)