Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2118
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 71 9e-14
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.27
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 29 0.36
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 29 0.36
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.47
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.83
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 28 0.83
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 1.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 2.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 2.5
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 26 3.3
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 26 3.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.3
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 4.4
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 4.4
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 4.4
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 4.4
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 5.8
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 7.7
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 7.7
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 7.7
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 7.7
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 70.9 bits (166), Expect = 9e-14
Identities = 35/96 (36%), Positives = 56/96 (58%)
Frame = +3
Query: 93 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 272
M +F F D+++ D+ ++R + + + G+K+K +Y ETV G V + L K G K
Sbjct: 1 MDYF-FKSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIRL-KDGRK 58
Query: 273 LEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
L+H G+K++ I QIE Y + N H+F V+EL P
Sbjct: 59 LDHDGVKIEFIGQIENTYDKGNIHEFTRSVQELASP 94
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 404 YPFKFTNV*KPYKFFTGSNVR 466
+ F+F +V KPY+ + G NV+
Sbjct: 103 FEFEFKHVDKPYESYIGKNVK 123
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.27
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = -2
Query: 307 LMSLTLMP*CSSFDPGFRNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTIS 128
L + T+ P + GF N T P T S S ++N S +P+S FTS+ F ++ T S
Sbjct: 640 LSNSTVAPTSTFTSSGF-NTTSGLP-TSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSS 697
Query: 127 IS 122
S
Sbjct: 698 AS 699
Score = 25.8 bits (54), Expect = 3.3
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 277 SSFDPGFRNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISIS 122
S+F N T P T S S +N + P+S FTS+ F ++ T S+S
Sbjct: 680 STFTSSGFNTTSGLP-TSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVS 730
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.1 bits (62), Expect = 0.36
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = -3
Query: 228 PFHRHNTTITF-----LFYHRPFSLQPPSVCQHHQKLFRYPPSDRTRKSSFSQY 82
PFH N F L Y P L PP + LFR PSDR+ Q+
Sbjct: 259 PFHGSNPNNIFKKIMSLEYELP-KLLPPDIVPLFSHLFRIQPSDRSTTQQIKQF 311
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 0.36
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -2
Query: 181 SVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFTWF---CFGIVTIKLSKT 11
++++S L++S+ T+S S + +K + + N+S F W FG++ + LS
Sbjct: 532 TIYSSLYSSLNSSNSTVSFSGIFDRVEKSVISELNFSFLFFLLWLLICAFGLIGV-LSSW 590
Query: 10 LK 5
LK
Sbjct: 591 LK 592
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 0.47
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -2
Query: 253 NVTFTFPETVSPS*YNNNFSFLPSSVFTS-ATFRLSASSKTISISA 119
+ T T TVS S + +N S +P+SV +S ++F S+SS T +++A
Sbjct: 280 STTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTA 325
Score = 28.3 bits (60), Expect = 0.62
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -2
Query: 229 TVSPS*YNNNFSFLPSSVFTSATFRLSASS 140
T + S Y N SFLPSSV +SA+ LS+SS
Sbjct: 216 TTTGSPYYNTSSFLPSSVISSAS--LSSSS 243
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 27.9 bits (59), Expect = 0.83
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -2
Query: 232 ETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFT 53
E VSP NN + +V T+ TF S+S+ + +A+ + L + +Y+Y+
Sbjct: 154 EIVSPK--NNPTTVYSGTVATTETF--SSSTVVVIPTAICDGVRGLEYAVYDYTISSSMN 209
Query: 52 WFCF 41
FC+
Sbjct: 210 EFCY 213
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 27.9 bits (59), Expect = 0.83
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -2
Query: 232 ETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFT 53
E VSP NN + +V T+ TF S+S+ + +A+ + L + +Y+Y+
Sbjct: 154 EIVSPK--NNPTTVYSGTVATTETF--SSSTVVVIPTAICDGVRGLEYAVYDYTISSSMN 209
Query: 52 WFCF 41
FC+
Sbjct: 210 EFCY 213
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = -2
Query: 256 RNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSAS 143
RN T VS Y+NN LP ++ TS+TFR SAS
Sbjct: 503 RNATQPTQPPVSQVDYSNN---LPPNLDTSSTFRSSAS 537
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 2 FFQCFTQFYRYYSKTKPRKKSFGRIIIYCENELFRVRSDGGYRNS 136
F Q ++ +YY+ + RK+S R ++ + RSDG Y S
Sbjct: 319 FSQSVARYRQYYNSNRDRKRSSSR----SDDREYHRRSDGRYDRS 359
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 2.5
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = -2
Query: 298 LTLMP*CSSFDPGFRNVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISA 119
LTL S + P F N +F +T N L S TSA+ + A S+T + ++
Sbjct: 18 LTLANANSLYSP-FNNSSFVDSDTSFSDLSRNGLLSLLDSNTTSASVQTIAISQTDNAAS 76
Query: 118 V*PNPKKLIFTIYNYSTKRFFT 53
P+ L ++ YS K T
Sbjct: 77 CIPSASLLSSSVVLYSAKETVT 98
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 135 LFRYPPSDRTRKSSFSQYIIIRPKDFLRGFVLE 37
LF+Y P RT ++ Q +I+ + G +LE
Sbjct: 108 LFKYVPDKRTLLENYDQLVIVVDETIDDGVILE 140
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -3
Query: 261 VSATSHSLSRRPFHRHNTTITFLFYHR---PFSLQPPSVCQHHQKLFRYPP 118
+SA S+S+ +P H HN Y R F + P +V + + R+ P
Sbjct: 175 LSAPSNSVQVKPKHEHNVDYNSSMYRRRTFRFWVHPDNVMEVKTYIMRHLP 225
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 232 ETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISIS 122
ET SP+ ++ S+ SSV +S+T+ + SS + S S
Sbjct: 664 ETSSPAYVSSTVSYTSSSVDSSSTYNSTGSSSSDSQS 700
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 144 DADKRKVAEVKTDDGKKEKLLLYYDGETV 230
+AD E+ + + KK LYYD TV
Sbjct: 157 EADTNNATEMVSSNAKKSVYPLYYDSATV 185
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 4.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 184 SSVFTSATFRLSASSKTISISAV*PNPKKLIFTIYNYSTKRFFTWFC 44
+SVF TF L T+ + V P + L F + +YS FT FC
Sbjct: 100 ASVFY-VTFILFEMPTTLLMKKVQPK-RMLAFIVISYSLTTIFTGFC 144
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 4.4
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 231 SGKVNVTLRKPGSKLEHQGIKVKLISQI-ELFYYRSNHHKFISLVKELTHPTTCFNTHHI 407
S K N+T RKP L S + +L SN +KF L+ + HP T ++
Sbjct: 142 SKKSNLTDRKPIPTSRKSNKSDSLASALSQLDINPSNVNKFDGLINIVDHPYTAEEFANV 201
Query: 408 LSNLL 422
L L+
Sbjct: 202 LLKLM 206
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 177 TDDGKKEKLLLYYDGETVSGKVNVTLRKPGS 269
+DD KK KL +DG N+++R PGS
Sbjct: 427 SDDNKKSKLNAEFDGHV----NNISVRPPGS 453
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 5.8
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 274 SFDPGFRNVTFT--FPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKTISISAV 116
+F F VT T FPE P NN+ S + + T T RL +K +A+
Sbjct: 458 AFPVSFLLVTLTDGFPEKPDPLFSNNDTSIITTLESTDETGRLRQLAKLFDHNAI 512
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 315 ELFYYRSNHHKFISLVKELTHPTTCFNTHHILSNL--LMSKNHTNFLQALMSGS 470
EL + ++ S+ +E +HP TH I + + ++S H L+A+ +G+
Sbjct: 373 ELIFNSLSNSSIASIQEEASHPLIKLQTHIICNKISEILSSAHIQ-LEAIRTGN 425
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 27 IVTIPKQNHVKNLLVE*LY-IVKMSFFGFGQTADIEIV 137
IVT+P +NH + ++ LY VK S+ F I +
Sbjct: 292 IVTLPVENHSSDAILTLLYNSVKESYHSFKHAMSISSI 329
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 282 DVQVLIPVSATSHSLSRRPFH 220
D+ V+I +HSLS RP H
Sbjct: 302 DISVMIVSPICAHSLSLRPIH 322
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 138 KLFRYPPSDRTRKSSFSQYI 79
++FR+PP D K SF ++I
Sbjct: 182 RVFRHPPPDFAGKVSFKEHI 201
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 253 NVTFTFPETVSPS*YNNNFSFLPSSVFTSATFRLSASSKT 134
NV +TF + + + Y NN S+LP S T+ S K+
Sbjct: 455 NVPYTFVDPYTYACYINNNSYLPPSYMDFYTWYNSPYPKS 494
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,347
Number of Sequences: 5004
Number of extensions: 42485
Number of successful extensions: 163
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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