Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2118
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971... 76 2e-14
11_06_0454 + 23786984-23786986,23787062-23787136,23787242-237873... 72 2e-13
03_05_0682 - 26691973-26692623,26692681-26692788,26694741-266948... 56 2e-08
04_01_0234 + 2963364-2963520,2963931-2964053,2964134-2964205,296... 33 0.12
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096... 31 0.35
02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154... 29 1.9
07_03_1450 + 26620178-26620456,26622122-26622775 28 3.3
03_02_0127 + 5777564-5779879 28 4.4
06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532 27 5.8
05_06_0003 + 24797098-24797223,24797981-24798193,24798289-247984... 27 5.8
12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135 27 7.6
10_05_0041 - 8469769-8470164 27 7.6
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 27 7.6
>12_02_0439 +
19096711-19096713,19096819-19096893,19097037-19097111,
19097225-19097297,19097536-19097580,19098217-19098328,
19098794-19098866,19099178-19099222,19100216-19100271,
19100370-19100545,19101289-19101476
Length = 306
Score = 75.8 bits (178), Expect = 2e-14
Identities = 38/91 (41%), Positives = 56/91 (61%)
Frame = +3
Query: 108 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQG 287
F DI I F DA RK VK D+G+ + ++ ET+SG+V+V + PG ++EH G
Sbjct: 8 FKPPCDISIAFSDARSRKQIAVKNDNGRTVMVPVFQSLETISGEVSV-VPVPGKRIEHLG 66
Query: 288 IKVKLISQIELFYYRSNHHKFISLVKELTHP 380
+K++L+ QIEL+ R + F SLV+EL P
Sbjct: 67 VKIELLGQIELYLERGKFYDFTSLVRELDIP 97
Score = 31.1 bits (67), Expect = 0.47
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
+ + +YPF+F+ V PY+ + G+NVR
Sbjct: 100 IYEKKTYPFEFSTVEMPYESYNGTNVR 126
>11_06_0454 +
23786984-23786986,23787062-23787136,23787242-23787316,
23787534-23787606,23787965-23788009,23788398-23788509,
23788640-23788706,23789010-23789054,23790138-23790193,
23790280-23790455,23790584-23790710,23791384-23791426
Length = 298
Score = 72.1 bits (169), Expect = 2e-13
Identities = 35/88 (39%), Positives = 55/88 (62%)
Frame = +3
Query: 108 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQG 287
F D+ I F D RK +K D+GK + + ET++G+V+V PG ++EHQG
Sbjct: 8 FKAPCDVFITFADERSRKQVAIKKDNGKTLMVPAFQSLETIAGEVSVA-PVPGKRVEHQG 66
Query: 288 IKVKLISQIELFYYRSNHHKFISLVKEL 371
+K++L+ QIEL++ R + + F SLV+EL
Sbjct: 67 VKIELLGQIELYHERGHFYDFTSLVREL 94
Score = 31.9 bits (69), Expect = 0.27
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 377 SNNLLQHTSYPFKFTNV*KPYKFFTGSNVR 466
+ + + +YPF+F+ V PY+ + G+NVR
Sbjct: 97 AGEIYERKTYPFEFSTVEMPYESYNGTNVR 126
>03_05_0682 -
26691973-26692623,26692681-26692788,26694741-26694807,
26695311-26695422,26695743-26695787,26696163-26696235,
26696321-26696362
Length = 365
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/57 (42%), Positives = 42/57 (73%)
Frame = +3
Query: 201 LLLYYDGETVSGKVNVTLRKPGSKLEHQGIKVKLISQIELFYYRSNHHKFISLVKEL 371
+L + ET++G+V++ PG ++EHQG+K++L+ QIEL++ R + + F SLV+EL
Sbjct: 2 VLAFQSLETIAGEVSIA-PIPGKRVEHQGVKIELLGQIELYHERGHFYDFTSLVREL 57
Score = 31.5 bits (68), Expect = 0.35
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 371 NTSNNLLQHTSYPFKFTNV*KPYKFFTGSNVR 466
+ + + + +YPF+F+ V PY + G+NVR
Sbjct: 58 DVAGEIYERKTYPFEFSTVEMPYDSYNGTNVR 89
>04_01_0234 +
2963364-2963520,2963931-2964053,2964134-2964205,
2964709-2964979,2965301-2965380,2966075-2967292,
2968137-2968315
Length = 699
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +3
Query: 111 GQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQGI 290
G+TA+I + D+ D+ + ++ G + +YD E + R P L H +
Sbjct: 96 GETAEIYDIADNVDELDMQFRQSSQGPRNMQFYFYDTEDADALAHRVRRSPDVDLNHVRV 155
Query: 291 KVKLISQ 311
++++ Q
Sbjct: 156 NLRILEQ 162
>10_08_0858 -
21108283-21108387,21108820-21108889,21109490-21109646,
21109930-21110062,21110409-21110583,21113353-21113453,
21113620-21113706,21115871-21115931,21116114-21116178,
21116534-21117631
Length = 683
Score = 31.5 bits (68), Expect = 0.35
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 237 KVNVTLRKPGSKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTH 377
+V ++LRKP K +H G VKLI+ E YY S + +KE+ +
Sbjct: 609 QVQISLRKPNRKCKHSGQTVKLIN--ENCYYLSTKRNNLK-IKEVNY 652
>02_05_0863 +
32313890-32314132,32314227-32314517,32315157-32315493,
32315944-32316278,32316763-32317010,32317296-32317881,
32317970-32318083,32318165-32318287,32318325-32318531
Length = 827
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 42 KQNHVKNLLVE*LYIVKMSFFG----FGQTADIEIVFDDADKRKVAE 170
KQ+H LL LYIV F G FG+ ++EI D + A+
Sbjct: 237 KQHHAAELLPTPLYIVYTQFLGQKEAFGENIEVEITGSTKDAQMFAQ 283
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 240 LSRRPFHRHNTTITFLFYHRPFSLQPPSVCQHHQKLFRYPPS 115
+ +P+H H+ + PFSL PP HH L + P+
Sbjct: 134 MPHQPYHHHH-------HLNPFSLPPPPPAYHHHHLIQEEPA 168
>03_02_0127 + 5777564-5779879
Length = 771
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 153 KRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQGIKVKLISQ 311
+R +E + +G + + + +G N+ + PG KL HQ + K +Q
Sbjct: 654 RRSASEFSSSEGLSARRIYKMNSTIDAGPSNLDVESPGVKLRHQDTQEKKDAQ 706
>06_03_0356 - 19826613-19826654,19827077-19827186,19827379-19827532
Length = 101
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -3
Query: 243 SLSRRPFHRHNTTITFLFYHRPFSLQPPSVCQHHQKLFRYPPSDRTRKSSFSQYIIIR 70
+L+ +PF H+ + F H L +C+HH + D+ K S Y I+
Sbjct: 44 TLTGQPFEGHSKIVGFATRHSKIVLLADGLCEHHYIISTQVKKDKD-KCPVSNYYEIQ 100
>05_06_0003 +
24797098-24797223,24797981-24798193,24798289-24798444,
24798555-24798959
Length = 299
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 192 KEKLLLYYDGETVSGKVNVTLRKPGSKLE 278
K+KL + Y GE +GK T R G K +
Sbjct: 126 KQKLKMIYLGEAFNGKATKTARSHGKKFQ 154
>12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135
Length = 703
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 234 GKVNVTLR-KPGSKLEHQGIKVKLISQIELFYYRSNHHKFISLVKEL-THPTTCFNTHHI 407
GKV V + KP +E G+ L+ Q R + V+ L HPT F T+H+
Sbjct: 453 GKVEVKIICKPSYVIELNGLNYDLMEQKSDCIVRCVARTIKTAVETLPNHPTISFKTYHV 512
>10_05_0041 - 8469769-8470164
Length = 131
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 152 QTEGG*SENGRW*KRKVIVVL*R*NGLRESEC 247
+ EGG SE GRW K + +L G+ +S C
Sbjct: 72 EREGGRSELGRWPKAATMAMLTGARGMADSGC 103
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 108 FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRK 260
F +T ++ + +D K + K DD E + Y+GE+ N ++ +
Sbjct: 516 FTETKSVDEIKEDNTAAKSPKTKEDDSTVESSEIKYEGESKQNTTNKSIEQ 566
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,852,142
Number of Sequences: 37544
Number of extensions: 231719
Number of successful extensions: 582
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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