Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2118
(470 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sortin... 142 4e-34
BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sortin... 141 1e-33
BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sortin... 141 1e-33
BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sortin... 121 1e-27
AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sortin... 121 1e-27
AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sortin... 121 1e-27
AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protei... 121 1e-27
AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens ... 119 4e-27
>BC098386-1|AAH98386.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 142 bits (345), Expect = 4e-34
Identities = 62/96 (64%), Positives = 79/96 (82%)
Frame = +3
Query: 93 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 272
MSFFGFGQ+ ++EI+ +DA+ RK AE KT+DGKKEK L+YDGETVSGKV++ LR P +
Sbjct: 1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALRNPNKR 60
Query: 273 LEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
LEHQGIK++ I QIEL+Y R NHH+F+SLVK+L P
Sbjct: 61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARP 96
Score = 32.3 bits (70), Expect = 0.87
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
+ Q ++ F+FT+V KPY+ +TG NV+
Sbjct: 99 ITQSQAFDFEFTHVEKPYESYTGQNVK 125
>BC014128-1|AAH14128.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 141 bits (342), Expect = 1e-33
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 93 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 272
MSFFGFGQ+ ++EI+ +DA+ RK AE KT+DGKKEK L+YDGETVSGKV++ L+ P +
Sbjct: 1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKR 60
Query: 273 LEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
LEHQGIK++ I QIEL+Y R NHH+F+SLVK+L P
Sbjct: 61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARP 96
Score = 32.3 bits (70), Expect = 0.87
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
+ Q ++ F+FT+V KPY+ +TG NV+
Sbjct: 99 ITQSQAFDFEFTHVEKPYESYTGQNVK 125
>BC009747-1|AAH09747.1| 336|Homo sapiens vacuolar protein sorting
26 homolog B (S. pombe) protein.
Length = 336
Score = 141 bits (342), Expect = 1e-33
Identities = 61/96 (63%), Positives = 79/96 (82%)
Frame = +3
Query: 93 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 272
MSFFGFGQ+ ++EI+ +DA+ RK AE KT+DGKKEK L+YDGETVSGKV++ L+ P +
Sbjct: 1 MSFFGFGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLALKNPNKR 60
Query: 273 LEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
LEHQGIK++ I QIEL+Y R NHH+F+SLVK+L P
Sbjct: 61 LEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARP 96
Score = 32.3 bits (70), Expect = 0.87
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
+ Q ++ F+FT+V KPY+ +TG NV+
Sbjct: 99 ITQSQAFDFEFTHVEKPYESYTGQNVK 125
>BC022505-1|AAH22505.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 121 bits (291), Expect = 1e-27
Identities = 55/98 (56%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +3
Query: 93 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 266
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 267 SKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
+LEHQGI+++ + QIELF +SN H+F++LVKEL P
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALP 98
Score = 32.3 bits (70), Expect = 0.87
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
L Q SY F+F V KPY+ + G+NVR
Sbjct: 101 LTQSRSYDFEFMQVEKPYESYIGANVR 127
>AL596223-4|CAH71501.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 121 bits (291), Expect = 1e-27
Identities = 55/98 (56%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +3
Query: 93 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 266
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 267 SKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
+LEHQGI+++ + QIELF +SN H+F++LVKEL P
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALP 98
Score = 32.3 bits (70), Expect = 0.87
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
L Q SY F+F V KPY+ + G+NVR
Sbjct: 101 LTQSRSYDFEFMQVEKPYESYIGANVR 127
>AL442635-2|CAH71779.1| 327|Homo sapiens vacuolar protein sorting
26 homolog A (S. pombe) protein.
Length = 327
Score = 121 bits (291), Expect = 1e-27
Identities = 55/98 (56%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +3
Query: 93 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 266
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 267 SKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
+LEHQGI+++ + QIELF +SN H+F++LVKEL P
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALP 98
Score = 32.3 bits (70), Expect = 0.87
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
L Q SY F+F V KPY+ + G+NVR
Sbjct: 101 LTQSRSYDFEFMQVEKPYESYIGANVR 127
>AF175266-1|AAF89954.1| 327|Homo sapiens vacuolar sorting protein
26 protein.
Length = 327
Score = 121 bits (291), Expect = 1e-27
Identities = 55/98 (56%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +3
Query: 93 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 266
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 267 SKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
+LEHQGI+++ + QIELF +SN H+F++LVKEL P
Sbjct: 61 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALP 98
Score = 32.3 bits (70), Expect = 0.87
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
L Q SY F+F V KPY+ + G+NVR
Sbjct: 101 LTQSRSYDFEFMQVEKPYESYIGANVR 127
>AK022992-1|BAB14351.1| 327|Homo sapiens protein ( Homo sapiens
cDNA FLJ12930 fis, clone NT2RP2004816, highly similar to
H58 PROTEIN. ).
Length = 327
Score = 119 bits (287), Expect = 4e-27
Identities = 54/98 (55%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +3
Query: 93 MSFFG--FGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPG 266
MSF G FG +I+IV +D + RK+AE+KT+DGK EK L+YDGE+VSGKVN+ ++PG
Sbjct: 1 MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 60
Query: 267 SKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
+LEHQGI+++ + +IELF +SN H+F++LVKEL P
Sbjct: 61 KRLEHQGIRIEFVGRIELFNDKSNTHEFVNLVKELALP 98
Score = 32.3 bits (70), Expect = 0.87
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 386 LLQHTSYPFKFTNV*KPYKFFTGSNVR 466
L Q SY F+F V KPY+ + G+NVR
Sbjct: 101 LTQSRSYDFEFMQVEKPYESYIGANVR 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,639,133
Number of Sequences: 237096
Number of extensions: 1288985
Number of successful extensions: 2939
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2939
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -