Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2118
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68220-4|CAA92489.2| 408|Caenorhabditis elegans Hypothetical pr... 104 3e-23
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p... 28 3.9
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ... 28 3.9
AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical ... 28 3.9
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 27 5.1
U49941-4|AAP46282.1| 271|Caenorhabditis elegans Hypothetical pr... 27 5.1
U49941-3|AAP46281.1| 451|Caenorhabditis elegans Hypothetical pr... 27 5.1
U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical pr... 27 5.1
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 27 5.1
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 27 5.1
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 27 5.1
Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein ... 27 6.8
Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein ... 27 6.8
Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein. 27 6.8
U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned expre... 27 6.8
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 27 6.8
L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z68220-4|CAA92489.2| 408|Caenorhabditis elegans Hypothetical
protein T20D3.7 protein.
Length = 408
Score = 104 bits (250), Expect = 3e-23
Identities = 46/93 (49%), Positives = 63/93 (67%)
Frame = +3
Query: 102 FGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSKLEH 281
FGFGQ+A+I+I + D RK+ + + DDG LYYDGE+V+G V+V L+K K EH
Sbjct: 57 FGFGQSAEIQIRLSNEDTRKIVKARGDDGNMHDHFLYYDGESVTGTVHVNLKKANHKFEH 116
Query: 282 QGIKVKLISQIELFYYRSNHHKFISLVKELTHP 380
QGI+++ I QIE++Y R N FISL +EL P
Sbjct: 117 QGIRIEFIGQIEVYYDRGNQQDFISLTRELARP 149
Score = 33.9 bits (74), Expect = 0.059
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 383 NLLQHTSYPFKFTNV*KPYKFFTGSNVR 466
+L Q+ +PF+F NV KP++ + G+NV+
Sbjct: 151 DLTQNAQFPFEFNNVEKPFETYMGTNVK 178
>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 261 PGSKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHPTT 386
PG++ EH ++ I +E+F YR N + ++ KE+ T
Sbjct: 274 PGTESEHDDLREASIQGLEVFLYR-NPQEVVAFEKEVIQQLT 314
>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 261 PGSKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELTHPTT 386
PG++ EH ++ I +E+F YR N + ++ KE+ T
Sbjct: 274 PGTESEHDDLREASIQGLEVFLYR-NPQEVVAFEKEVIQQLT 314
>AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical
protein C17B7.5 protein.
Length = 820
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 120 ADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKV--NVTLRKPGSKLEHQGIK 293
A+IE V D + + +D KK+ L + T+ GKV +T++ PG + + GI+
Sbjct: 678 ANIERVVDK--RLNQVYLHRNDSKKDTYLNWVFDMTIDGKVVDKLTIKVPGMEQQQLGIR 735
Query: 294 VKL 302
L
Sbjct: 736 ASL 738
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 5 FQCFTQFYRYYSKTKPRKKSFGRIIIYCENELFRVR 112
F T Y+ + P K+ GRI+I C + ++ ++
Sbjct: 1159 FGLLTYLIAYFIRLSPTTKTLGRILIICNSVIWSLK 1194
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 219 RHNTTITFLFYHRPFSLQPP 160
RH+ T + +Y PFSL PP
Sbjct: 793 RHSKTFSLSYYFSPFSLLPP 812
>U49941-4|AAP46282.1| 271|Caenorhabditis elegans Hypothetical
protein K10B3.6c protein.
Length = 271
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 194 FFTIVRFHFSHLPFVSIIKNYFDIRRLTEPEKAHF 90
FF + F S LPF SI KNY+ + +K F
Sbjct: 43 FFLTISFSSSILPFSSIQKNYWLVTEKKNQKKKAF 77
>U49941-3|AAP46281.1| 451|Caenorhabditis elegans Hypothetical
protein K10B3.6b protein.
Length = 451
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 194 FFTIVRFHFSHLPFVSIIKNYFDIRRLTEPEKAHF 90
FF + F S LPF SI KNY+ + +K F
Sbjct: 43 FFLTISFSSSILPFSSIQKNYWLVTEKKNQKKKAF 77
>U49941-2|AAB53873.1| 757|Caenorhabditis elegans Hypothetical
protein K10B3.6a protein.
Length = 757
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 194 FFTIVRFHFSHLPFVSIIKNYFDIRRLTEPEKAHF 90
FF + F S LPF SI KNY+ + +K F
Sbjct: 43 FFLTISFSSSILPFSSIQKNYWLVTEKKNQKKKAF 77
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
T05A12.4a protein.
Length = 1622
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 188 TIVRFHFSHLPFVSIIKNYFDIRRLTEPEKAH 93
T+ + HF HLPFV++ +D +LT + H
Sbjct: 1032 TVKKHHFPHLPFVAL----YDTNKLTPIGRVH 1059
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 5 FQCFTQFYRYYSKTKPRKKSFGRIIIYCENELFRVR 112
F T Y+ + P K+ GRI+I C + ++ ++
Sbjct: 1159 FGLLTYLIAYFIRLSPTTKTLGRILIICNSVIWSLK 1194
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 5 FQCFTQFYRYYSKTKPRKKSFGRIIIYCENELFRVR 112
F T Y+ + P K+ GRI+I C + ++ ++
Sbjct: 1146 FGLLTYLIAYFIRLSPTTKTLGRILIICNSVIWSLK 1181
>Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein
protein.
Length = 264
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 264 PVSATSHSLSRRPFHRHNTTITFLFYHRPF-SLQPPSVCQHHQKLFRY 124
PVS+++ S ++RP + +N I PF SL+ + ++ F Y
Sbjct: 82 PVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSY 129
>Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein
protein.
Length = 228
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 264 PVSATSHSLSRRPFHRHNTTITFLFYHRPF-SLQPPSVCQHHQKLFRY 124
PVS+++ S ++RP + +N I PF SL+ + ++ F Y
Sbjct: 46 PVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSY 93
>Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein.
Length = 264
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 264 PVSATSHSLSRRPFHRHNTTITFLFYHRPF-SLQPPSVCQHHQKLFRY 124
PVS+++ S ++RP + +N I PF SL+ + ++ F Y
Sbjct: 82 PVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSY 129
>U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned
expression site protein 1 protein.
Length = 264
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 264 PVSATSHSLSRRPFHRHNTTITFLFYHRPF-SLQPPSVCQHHQKLFRY 124
PVS+++ S ++RP + +N I PF SL+ + ++ F Y
Sbjct: 82 PVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSY 129
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 194 RKVIVVL*R*NGLRESECDVAETGIKT*TSRHQ 292
R+ VV R + E ECD AET ++ T RHQ
Sbjct: 786 RRRRVVRARNDDWEEIECDDAETEVRQCTGRHQ 818
>L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical
protein R05D3.8 protein.
Length = 187
Score = 26.6 bits (56), Expect = 9.0
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Frame = +3
Query: 87 VKMSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLL---YYDGETVSGKVNVTLR 257
+KM+F +G+ D+E V D + D + +LL Y + + L+
Sbjct: 48 LKMNFGAYGKITDVEFVSDSEGPLHFCIITFADSRSVDVLLTKSIYIRDVLMFTRRAVLK 107
Query: 258 KPGSKLEHQGIKVKLISQIELFYYRSNHHKFISLVKELT--HPTTCFNTHH 404
+ EH K+K Q L NH +++ + +T H ++ +++H
Sbjct: 108 ESVKIAEH---KIKEQEQQNLVQLPPNHTAYLTPSRPVTSVHASSSASSNH 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,521
Number of Sequences: 27780
Number of extensions: 236197
Number of successful extensions: 735
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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