Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2117
         (491 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    24   0.86 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   0.86 
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   6.1  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 190 FNLNYSALLRHISNTEDTERNDLFKGRFEEAQPIMSSIFPNEIRT*QM 47
           FN++ S  L   S+T D   N      F E+    SS+FPN IRT  M
Sbjct: 29  FNISTSNYLYTPSSTIDLY-NTSSVSNFNESS---SSVFPNYIRTTSM 72


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -2

Query: 190 FNLNYSALLRHISNTEDTERNDLFKGRFEEAQPIMSSIFPNEIRT*QM 47
           FN++ S  L   S+T D   N      F E+    SS+FPN IRT  M
Sbjct: 29  FNISTSNYLYTPSSTIDLY-NTSSVSNFNESS---SSVFPNYIRTTSM 72


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 202 CFFFFNLNYSALLRHISNTEDTERNDLFKGRFE 104
           C F +N  +S LL  I +     +  L++ R+E
Sbjct: 142 CQFLYNCFHSTLLLMILSRYQRLKAQLWQNRYE 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,173
Number of Sequences: 336
Number of extensions: 2320
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)