Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2117
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.7  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.2  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   8.2  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 201 VFFFSILIIQRCLDTLAIQRTQKGMIFSKVVLKRHNPLCRRFFQMKYV 58
           +F F  ++ + CLD+L   R        K++ K+ NP  R +   K V
Sbjct: 311 LFDFCFILFRDCLDSLKDCRIHLLESMLKLINKKENPKLRDYGMNKLV 358


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 139  TERNDLFKGRFEEAQ--PIMSSIFPNEIRT*QMFMIDSPGEG 20
            T R +  + R  E Q   I++S     +RT Q+F I   GEG
Sbjct: 1445 TSRGNFPRSRLREKQRGKILASWVTGRLRTTQVFYIRGSGEG 1486


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = -2

Query: 256 VFLLTL*RSSLQTFNRIKCFFFFNLNYSALLRHISNTEDTER 131
           V L  +   +++ ++ + CFFF+ ++Y A +  + + +   R
Sbjct: 115 VLLFFMTTGAVRRYSMMLCFFFWRISYDAGIGFLLHMQSNHR 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,171
Number of Sequences: 5004
Number of extensions: 35525
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)