Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2117
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0861 - 23763927-23764034,23764140-23764196,23764624-237647...    29   2.0  
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056...    27   6.2  
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51...    27   8.2  

>12_02_0861 -
           23763927-23764034,23764140-23764196,23764624-23764740,
           23764825-23764924,23765049-23765239,23765328-23765421,
           23765918-23766023,23766223-23766337,23766487-23766554,
           23766724-23767047,23767444-23767647,23767910-23768059,
           23768151-23768256,23768383-23768490
          Length = 615

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -1

Query: 365 FCLMNSFHNGSEMKINCNVNLFIYFNRSI**SRTLIRFFIDALTKFASD 219
           +CL  SF N +E   N    + I    S+     L R F D L K   D
Sbjct: 281 YCLSQSFRNSTEADKNAAYKVLIALRESVMLRTNLNRLFQDDLNKLKDD 329


>01_06_0895 -
           32804433-32804744,32804948-32805163,32805301-32805642,
           32805778-32806020,32806130-32806582,32806898-32807113,
           32808360-32808432,32808750-32808790,32809027-32809118,
           32809222-32809333,32810003-32810078,32810154-32810301,
           32811195-32811336,32812120-32812196,32813568-32813619
          Length = 864

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 438 PWGGI*LGGHLFKSGVHNAV 379
           PWGG  LGG L+  GVH+ V
Sbjct: 286 PWGG--LGGTLWDDGVHSTV 303


>02_01_0074 +
           519401-519512,519513-519548,519647-519706,519785-519877,
           519968-520033,520146-520223,520300-520407,520478-520554,
           520632-520706,520792-520799,520981-521098,521199-521625,
           521627-521661
          Length = 430

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 181 NYSALLRHISNTEDTERNDLFKGRFEEAQPIMSSIFP 71
           +Y++L+ HI +++ T  NDL        Q  MS + P
Sbjct: 215 SYTSLMEHIISSQPTRCNDLENSILSLMQKNMSEVIP 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,733,076
Number of Sequences: 37544
Number of extensions: 203332
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)